miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00672;mir-190;AAPU01011510.1/87170-87259 7230:Drosophila
mojavensis
Length = 90
Score = 153 bits (77), Expect = 5e-37
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 7 gattccagtgagatatgtttgatattcttggttgttacattcaagagttcacccaggaat 66
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 5 gattccagtgagatatgtttgatattcttggttgttacattcaaaagttcacccaggaat 64
Query: 67 caaacatattattactgtgat 87
|||||||||||||||||||||
Sbjct: 65 caaacatattattactgtgat 85
>RF00672;mir-190;AAGH01005520.1/1141-1230 7240:Drosophila simulans
Length = 90
Score = 131 bits (66), Expect = 2e-30
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 9 ttccagtgagatatgtttgatattcttggttgttacattcaagagttcacccaggaatca 68
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 7 ttccagtgagatatgtttgatattcttggttgtatcattcaaaagttcacccaggaatca 66
Query: 69 aacatattattactgtga 86
||||||||||||||||||
Sbjct: 67 aacatattattactgtga 84
>RF00672;mir-190;AAGE02010108.1/2181-2091 7159:Aedes aegypti
(yellow fever mosquito)
Length = 91
Score = 95.6 bits (48), Expect = 1e-19
Identities = 73/80 (91%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 7 gattccagtgagatatgtttgatattcttggttgttacattcaagagt-tcacccaggaa 65
|||||| |||||||||||||||||||||||||||||| ||| | | | |||||||||||
Sbjct: 5 gattccggtgagatatgtttgatattcttggttgttaaattttatattatcacccaggaa 64
Query: 66 tcaaacatattattactgtg 85
||||||||||||||||||||
Sbjct: 65 tcaaacatattattactgtg 84
>RF00672;mir-190;AAAB01008807.1/2608463-2608553 180454:Anopheles
gambiae str. PEST
Length = 91
Score = 67.9 bits (34), Expect = 2e-11
Identities = 65/74 (87%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 14 gtgagatatgtttgatattcttggttgtt-acattcaagagttcacccaggaatcaaaca 72
||||||||||||||||||||||||||||| | ||| | ||||||||||||||||||
Sbjct: 12 gtgagatatgtttgatattcttggttgttaagatttcaattatcacccaggaatcaaaca 71
Query: 73 tattattactgtga 86
||||||||| ||||
Sbjct: 72 tattattaccgtga 85
>RF00672;mir-190;ABLF01005497.1/9822-9738 7029:Acyrthosiphon pisum
(pea aphid)
Length = 85
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 14 gtgagatatgtttgatattcttggttgtta 43
||||||||||||||||||||||||||||||
Sbjct: 12 gtgagatatgtttgatattcttggttgtta 41
>RF00672;mir-190;AAZO01006982.1/10545-10459 121224:Pediculus
humanus corporis (human body louse)
Length = 87
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 15 tgagatatgtttgatattcttggttgtt 42
||||||||||||||||||||||||||||
Sbjct: 13 tgagatatgtttgatattcttggttgtt 40
>RF00672;mir-190;BABH01038078.1/4948-5036 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 gagatatgtttgatattcttggttgtt 42
|||||||||||||||||||||||||||
Sbjct: 15 gagatatgtttgatattcttggttgtt 41
>RF00672;mir-190;AADG05004972.1/16510-16597 7460:Apis mellifera
(honey bee)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 17 agatatgtttgatattcttggttgtt 42
||||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgtt 40
>RF00672;mir-190;AAJJ01000811.1/4671-4585 7070:Tribolium castaneum
(red flour beetle)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 56/64 (87%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 17 agatatgtttgatattcttggttgttacattcaagagttcacccaggaatcaaacatatt 76
|||||||||||||||||||||||| || || || ||||||||||| |||||||||||
Sbjct: 15 agatatgtttgatattcttggttg-tatttttaa---ttcacccaggagtcaaacatatt 70
Query: 77 atta 80
||||
Sbjct: 71 atta 74
>RF00672;mir-190;ABJB010542931.1/4708-4623 6945:Ixodes scapularis
(black-legged tick)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 gagatatgtttgatattcttggttgt 41
||||||||||||||||||||||||||
Sbjct: 15 gagatatgtttgatattcttggttgt 40
>RF00672;mir-190;AAZX01003157.1/32919-33003 7425:Nasonia
vitripennis (jewel wasp)
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 agatatgtttgatattcttggttgt 41
|||||||||||||||||||||||||
Sbjct: 15 agatatgtttgatattcttggttgt 39
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 ccaggaatcaaacatattattac 81
|||||||||||||||||||||||
Sbjct: 53 ccaggaatcaaacatattattac 75
