miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 81.8 bits (41), Expect = 1e-15
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 37 ccgatggtgctcttttaagttatgcagttgctgcctcaagctttctgcctcgctttg 93
|||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 71 ccgatggtgctcttgcaagttatgcagttgctgcctcaagcttcctgcctccctttg 127
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 65.9 bits (33), Expect = 8e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 53 aagttatgcagttgctgcctcaagctttctgcctcgctttg 93
||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 92 aagttatgcagttgctgcctcaagcttgctgcctccctttg 132
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 53 aagttatgcagttgctgcctcaagctttctgcctc 87
||||||||||||||||||||||||||| |||||||
Sbjct: 87 aagttatgcagttgctgcctcaagcttgctgcctc 121
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 59 tgcagttgctgcctcaagctttctgcctcgctttg 93
||||||||||||||||||||| ||||||| |||||
Sbjct: 137 tgcagttgctgcctcaagcttgctgcctccctttg 171
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 53 aagttatgcagttgctgcctcaagctttctgcctcgctttg 93
||||| |||||||| |||||||||||| ||||||| |||||
Sbjct: 125 aagttgtgcagttgttgcctcaagcttgctgcctccctttg 165
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 53 aagttatgcagttgctgcctcaagctttctgcctc 87
||||| |||||||| |||||||||||| |||||||
Sbjct: 123 aagttgtgcagttgttgcctcaagcttgctgcctc 157
