miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00679;mir-210;AANI01015309.1/4850-4756 7244:Drosophila virilis
Length = 95
Score = 143 bits (72), Expect = 5e-34
Identities = 78/80 (97%)
Strand = Plus / Minus
Query: 16 ctcttacaatagccgctgtcacacgcacaagagtcttaaatctaatcttgtgcagtggcc 75
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 81 ctcttacaatagccgctgtcacacgcacaagagtcttgagtctaatcttgtgcagtggcc 22
Query: 76 agcagctgcaataagtaccg 95
||||||||||||||||||||
Sbjct: 21 agcagctgcaataagtaccg 2
>RF00679;mir-210;AAPT01021333.1/33432-33528 7222:Drosophila
grimshawi
Length = 97
Score = 115 bits (58), Expect = 1e-25
Identities = 73/77 (94%), Gaps = 2/77 (2%)
Strand = Plus / Minus
Query: 16 ctcttacaatagccgctgtcacacgcacaagagtc--ttaaatctaatcttgtgcagtgg 73
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 83 ctcttacaatagccgctgtcacacgcacaagagtcttttgaatctaatcttgtgcagtgg 24
Query: 74 ccagcagctgcaataag 90
||||||||| |||||||
Sbjct: 23 ccagcagctccaataag 7
>RF00679;mir-210;AADG05000839.1/5125-5031 7460:Apis mellifera
(honey bee)
Length = 95
Score = 107 bits (54), Expect = 3e-23
Identities = 60/62 (96%)
Strand = Plus / Minus
Query: 24 atagccgctgtcacacgcacaagagtcttaaatctaatcttgtgcagtggccagcagctg 83
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 73 atagccgctgtcacacgcacaagagtcttatgtctaatcttgtgcagtggccagcagctg 14
Query: 84 ca 85
||
Sbjct: 13 ca 12
>RF00679;mir-210;AAGE02019443.1/85298-85204 7159:Aedes aegypti
(yellow fever mosquito)
Length = 95
Score = 93.7 bits (47), Expect = 4e-19
Identities = 63/67 (94%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 21 acaatagccgctgtcacacgcacaagagtcttaaatctaatcttgtgcagtggccagcag 80
|||||||||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct: 75 acaatagccgttgtcacacgcacaagagtcataa-tctaatcttgtgcagtggtcagcag 17
Query: 81 ctgcaat 87
|||||||
Sbjct: 16 ctgcaat 10
>RF00679;mir-210;BABH01000454.1/26338-26435 7091:Bombyx mori
(domestic silkworm)
Length = 98
Score = 79.8 bits (40), Expect = 7e-15
Identities = 60/66 (90%), Gaps = 3/66 (4%)
Strand = Plus / Minus
Query: 22 caatagccgctgtcacacgcacaagagtcttaaat---ctaatcttgtgcagtggccagc 78
|||||||||||||||||||||||||||| | || | ||||||||||||||||||||||
Sbjct: 78 caatagccgctgtcacacgcacaagagtataaacttgactaatcttgtgcagtggccagc 19
Query: 79 agctgc 84
||||||
Sbjct: 18 agctgc 13
>RF00679;mir-210;AAJJ01000173.1/48564-48466 7070:Tribolium
castaneum (red flour beetle)
Length = 99
Score = 75.8 bits (38), Expect = 1e-13
Identities = 61/68 (89%), Gaps = 3/68 (4%)
Strand = Plus / Minus
Query: 21 acaatagccgctgtcacacgcacaagagtcttaa---atctaatcttgtgcagtggccag 77
||||||||||||||||||||||||||||| ||| |||||||||||||||| | ||||
Sbjct: 79 acaatagccgctgtcacacgcacaagagttctaaaatatctaatcttgtgcagcgtccag 20
Query: 78 cagctgca 85
||||||||
Sbjct: 19 cagctgca 12
>RF00679;mir-210;AAAB01008958.1/106879-106786 180454:Anopheles
gambiae str. PEST
Length = 94
Score = 73.8 bits (37), Expect = 4e-13
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 23 aatagccgctgtcacacgcacaagagtcttaaatctaatcttgtgcagtggccagcagct 82
|||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct: 73 aatagccgttgtcacacgcacaagagtcgcat-tctaatcttgtgcagtggtcagcagct 15
Query: 83 gcaat 87
|||||
Sbjct: 14 gcaat 10
>RF00679;mir-210;AAZO01006118.1/235-143 121224:Pediculus humanus
corporis (human body louse)
Length = 93
Score = 56.0 bits (28), Expect = 1e-07
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 37 cacgcacaagagtcttaaatctaatcttgtgcagtggccagcagctgc 84
||||||||||||||||||| ||||||||| || ||| |||||||||||
Sbjct: 59 cacgcacaagagtcttaaa-ctaatcttgggctgtgtccagcagctgc 13
>RF00679;mir-210;ABJB010428283.1/1369-1447 6945:Ixodes scapularis
(black-legged tick)
Length = 79
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 22 caatagccgctgtcacacgcacaaga 47
||||||||||||||||||||||||||
Sbjct: 67 caatagccgctgtcacacgcacaaga 42
