miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00251;mir-219;AANI01017339.1/197168-197098 7244:Drosophila
          virilis
          Length = 71

 Score =  109 bits (55), Expect = 7e-24
 Identities = 67/71 (94%)
 Strand = Plus / Plus

                                                                      
Query: 14 agctatgattgtccaaacgcaattcttgttgatatccaatactcaagggttgtgactgga 73
          ||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| 
Sbjct: 1  agctatgattgtccaaacgcaattcttgttgatttcaaatactcaagggttgcgactggg 60

                     
Query: 74 catcgcggctc 84
          |||||||||||
Sbjct: 61 catcgcggctc 71




>RF00251;mir-219;AAZX01004956.1/9666-9737 7425:Nasonia vitripennis
          (jewel wasp)
          Length = 72

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 15 gctatgattgtccaaacgcaattcttgt 42
          ||||||||||||||||||||||||||||
Sbjct: 2  gctatgattgtccaaacgcaattcttgt 29




>RF00251;mir-219;ABEP02034803.1/1504-1571 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 68

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 19 tgattgtccaaacgcaattcttgttga 45
          |||||||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttgttga 32




>RF00251;mir-219;AAWU01002102.1/48923-48993 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 71

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 59/66 (89%), Gaps = 3/66 (4%)
 Strand = Plus / Plus

                                                                      
Query: 14 agctatgattgtccaaacgcaattcttgt-tgatatcca-atactcaagggttgtgactg 71
          |||| |||||||||||||||||||||||| |||| || | |||| |||| ||||||||||
Sbjct: 1  agctctgattgtccaaacgcaattcttgtatgat-tcaagatacccaagagttgtgactg 59

                
Query: 72 gacatc 77
          ||||||
Sbjct: 60 gacatc 65




>RF00251;mir-219;AAGE02015776.1/56998-57072 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 75

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 14 agctatgattgtccaaacgcaattcttgtt 43
          |||| |||||||||||||||||||||||||
Sbjct: 1  agctctgattgtccaaacgcaattcttgtt 30




>RF00251;mir-219;AAZO01005883.1/1118-1050 121224:Pediculus humanus
          corporis (human body louse)
          Length = 69

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 19 tgattgtccaaacgcaattcttgtt 43
          |||||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttgtt 30




>RF00251;mir-219;ABLF01000757.1/13275-13349 7029:Acyrthosiphon
          pisum (pea aphid)
          Length = 75

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 19 tgattgtccaaacgcaattcttgtt 43
          |||||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttgtt 30




>RF00251;mir-219;AADG05004460.1/8340-8269 7460:Apis mellifera
          (honey bee)
          Length = 72

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 18 atgattgtccaaacgcaattcttgt 42
          |||||||||||||||||||||||||
Sbjct: 5  atgattgtccaaacgcaattcttgt 29




>RF00251;mir-219;ABKP02018537.1/25428-25503 377271:Anopheles
          gambiae M
          Length = 76

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 14 agctatgattgtccaaacgcaattcttgt 42
          |||| ||||||||||||||||||||||||
Sbjct: 1  agctctgattgtccaaacgcaattcttgt 29




>RF00251;mir-219;AAJJ01000028.1/33047-32979 7070:Tribolium
          castaneum (red flour beetle)
          Length = 69

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 19 tgattgtccaaacgcaattcttgtt 43
          |||||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttgtt 30




>RF00251;mir-219;ABJB010034680.1/676-609 6945:Ixodes scapularis
          (black-legged tick)
          Length = 68

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 14 agctatgattgtccaaacgcaattcttgt 42
          |||| ||||||||||||||||||||||||
Sbjct: 1  agctgtgattgtccaaacgcaattcttgt 29




>RF00251;mir-219;ABRQ01073340.1/6903-6975 9813:Procavia capensis
          (cape rock hyrax)
          Length = 73

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgattgtccaaacgcaattcttgt 42
          ||||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttgt 29




>RF00251;mir-219;AAWZ01042166.1/945-878 28377:Anolis carolinensis
          (green anole)
          Length = 68

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgattgtccaaacgcaattcttgt 42
          ||||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttgt 29




>RF00251;mir-219;AADN02026640.1/6422-6348 9031:Gallus gallus
          (chicken)
          Length = 75

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgattgtccaaacgcaattcttgt 42
          ||||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttgt 29




>RF00251;mir-219;BX323065.6/59875-59803 7955:Danio rerio
          (zebrafish)
          Length = 73

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgattgtccaaacgcaattcttgt 42
          ||||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttgt 29




>RF00251;mir-219;BX088597.18/18564-18638 7955:Danio rerio
          (zebrafish)
          Length = 75

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgattgtccaaacgcaattcttgt 42
          ||||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttgt 29




>RF00251;mir-219;FP067442.4/5562-5494 7955:Danio rerio (zebrafish)
          Length = 69

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgattgtccaaacgcaattcttgt 42
          ||||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttgt 29




>RF00251;mir-219;AJ506968.1/8189-8258 31033:Takifugu rubripes
          Length = 70

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgattgtccaaacgcaattcttgt 42
          ||||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttgt 29




>RF00251;mir-219;ABPN01064052.1/58-131 163638:Rhamphochromis esox
          Length = 74

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgattgtccaaacgcaattcttgt 42
          ||||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttgt 29




>RF00251;mir-219;AANH01001091.1/47038-46966 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 73

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgattgtccaaacgcaattcttgt 42
          ||||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttgt 29




>RF00251;mir-219;AANH01012160.1/2138-2064 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 75

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgattgtccaaacgcaattcttgt 42
          ||||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttgt 29




>RF00251;mir-219;BAAF04001368.1/1865-1938 8090:Oryzias latipes
          (Japanese medaka)
          Length = 74

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgattgtccaaacgcaattcttgt 42
          ||||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttgt 29




>RF00251;mir-219;BAAE01251032.1/4888-4958 8090:Oryzias latipes
          (Japanese medaka)
          Length = 71

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgattgtccaaacgcaattcttgt 42
          ||||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttgt 29




>RF00251;mir-219;BAAE01153842.1/2224-2151 8090:Oryzias latipes
          (Japanese medaka)
          Length = 74

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 19 tgattgtccaaacgcaattcttgt 42
          ||||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttgt 29




>RF00251;mir-219;AAGJ02132973.1/12655-12723
          7668:Strongylocentrotus purpuratus
          Length = 69

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 19 tgattgtccaaacgcaattcttgttga 45
          ||||||||| |||||||||||||||||
Sbjct: 6  tgattgtccgaacgcaattcttgttga 32




>RF00251;mir-219;CR848045.10/89252-89178 7955:Danio rerio
          (zebrafish)
          Length = 75

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tgattgtccaaacgcaattcttg 41
          |||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttg 28




>RF00251;mir-219;CAAB01001740.1/22605-22679 31033:Takifugu
          rubripes
          Length = 75

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tgattgtccaaacgcaattcttg 41
          |||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttg 28




>RF00251;mir-219;AANH01004623.1/138672-138748 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 77

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tgattgtccaaacgcaattcttg 41
          |||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttg 28




>RF00251;mir-219;BAAE01000431.1/3148-3074 8090:Oryzias latipes
          (Japanese medaka)
          Length = 75

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tgattgtccaaacgcaattcttg 41
          |||||||||||||||||||||||
Sbjct: 6  tgattgtccaaacgcaattcttg 28