miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00838;mir-252;AAFS01000005.1/103510-103621 46245:Drosophila
pseudoobscura pseudoobscura
Length = 112
Score = 212 bits (107), Expect = 7e-55
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 cattttggcggtttgctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cattttggcggtttgctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaa 65
Query: 61 tacctcctgctgcccaagtgcttattaaagcggcggtggtccaacag 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 tacctcctgctgcccaagtgcttattaaagcggcggtggtccaacag 112
>RF00838;mir-252;AAPP01019511.1/70614-70503 7217:Drosophila
ananassae
Length = 112
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 15 gctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctgcc 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 gctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctgcc 78
Query: 75 caagtgcttattaaagcggcg 95
|||||||||||||||||||||
Sbjct: 79 caagtgcttattaaagcggcg 99
>RF00838;mir-252;AABU01002774.1/5715658-5715545 7227:Drosophila
melanogaster (fruit fly)
Length = 114
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 15 gctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctgcc 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 gctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctgcc 79
Query: 75 caagtgcttattaaagcggcg 95
|||||||||||||||||||||
Sbjct: 80 caagtgcttattaaagcggcg 100
>RF00838;mir-252;AANI01014608.1/9402-9515 7244:Drosophila virilis
Length = 114
Score = 143 bits (72), Expect = 5e-34
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 13 ttgctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctg 72
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 18 ttgctttcctaagtactagtgccgcaggagttaggtttgtgtccgcaatgcctcctgctg 77
Query: 73 cccaagtgcttattaaagcg 92
||||||||||||||||||||
Sbjct: 78 cccaagtgcttattaaagcg 97
>RF00838;mir-252;AAQB01009407.1/423501-423388 7260:Drosophila
willistoni
Length = 114
Score = 135 bits (68), Expect = 1e-31
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 13 ttgctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctg 72
||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 18 ttgctttactaagtactagtgccgcaggagtttggttcgtgtccgtaatacctcctgctg 77
Query: 73 cccaagtgcttattaaagcg 92
||||||||||||||||||||
Sbjct: 78 cccaagtgcttattaaagcg 97
>RF00838;mir-252;AAPT01019325.1/16150-16037 7222:Drosophila
grimshawi
Length = 114
Score = 135 bits (68), Expect = 1e-31
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 13 ttgctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctg 72
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 18 ttgctttcctaagtactagtgccgcaggagttaggtttgtgtccgcaatgcctcctgctg 77
Query: 73 cccaagtgcttattaa 88
||||||||||||||||
Sbjct: 78 cccaagtgcttattaa 93
>RF00838;mir-252;AAPU01011022.1/144995-144882 7230:Drosophila
mojavensis
Length = 114
Score = 127 bits (64), Expect = 3e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 13 ttgctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctg 72
||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct: 18 ttgctttcctaagtactagtgccgcaggagttagggttgtgtccgcaatgcctcctgctg 77
Query: 73 cccaagtgcttattaaagcg 92
||||||||||||| ||||||
Sbjct: 78 cccaagtgcttatcaaagcg 97
>RF00838;mir-252;AAZX01009285.1/3883-4013 7425:Nasonia vitripennis
(jewel wasp)
Length = 131
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 18 ttcctaagtactagtgccgcaggagt 43
||||||||||||||||||||||||||
Sbjct: 25 ttcctaagtactagtgccgcaggagt 50
>RF00838;mir-252;BABH01035687.1/2460-2355 7091:Bombyx mori
(domestic silkworm)
Length = 106
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 ttcctaagtactagtgccgcaggag 42
|||||||||||||||||||||||||
Sbjct: 23 ttcctaagtactagtgccgcaggag 47
>RF00838;mir-252;AAZO01005296.1/52222-52118 121224:Pediculus
humanus corporis (human body louse)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 ctaagtactagtgccgcaggagtt 44
||||||||||||||||||||||||
Sbjct: 26 ctaagtactagtgccgcaggagtt 49
>RF00838;mir-252;AAGE02003685.1/79138-79037 7159:Aedes aegypti
(yellow fever mosquito)
Length = 102
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 ctttcctaagtactagtgccgcaggag 42
|||| ||||||||||||||||||||||
Sbjct: 21 ctttactaagtactagtgccgcaggag 47
>RF00838;mir-252;ABKP02026277.1/40376-40477 377271:Anopheles
gambiae M
Length = 102
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 ctttcctaagtactagtgccgcaggag 42
|||| ||||||||||||||||||||||
Sbjct: 21 ctttactaagtactagtgccgcaggag 47
>RF00838;mir-252;AAJJ01000151.1/90694-90592 7070:Tribolium
castaneum (red flour beetle)
Length = 103
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ctaagtactagtgccgcaggagt 43
|||||||||||||||||||||||
Sbjct: 26 ctaagtactagtgccgcaggagt 48
>RF00838;mir-252;ABLF01035568.1/15094-15205 7029:Acyrthosiphon
pisum (pea aphid)
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 18 ttcctaagtactagtgccgcaggagt 43
|||||||||||||||||||| |||||
Sbjct: 23 ttcctaagtactagtgccgcgggagt 48
>RF00838;mir-252;AADG05011415.1/92-6 7460:Apis mellifera (honey
bee)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 taagtactagtgccgcaggagt 43
||||||||||||||||||||||
Sbjct: 9 taagtactagtgccgcaggagt 30
