miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00822;mir-274;AADE01002814.1/8876-8780 46245:Drosophila
pseudoobscura pseudoobscura
Length = 97
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 tcccgtgctgcagtttcattttgtgaccgacactaacgggtaatggctggccgcaggact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcccgtgctgcagtttcattttgtgaccgacactaacgggtaatggctggccgcaggact 60
Query: 61 actcgtttttgcgatcacaatactgaaattgcagcaa 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 actcgtttttgcgatcacaatactgaaattgcagcaa 97
>RF00822;mir-274;AAKO01000079.1/37948-38047 7238:Drosophila
sechellia
Length = 100
Score = 73.8 bits (37), Expect = 4e-13
Identities = 80/92 (86%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 9 tgcagtttcattttgtgaccgacactaacgggtaatggctgg--ccgcaggactactcgt 66
||||||||| |||||||||||||||||||||||||| | | | | ||||| |||||||
Sbjct: 9 tgcagtttcgttttgtgaccgacactaacgggtaattgtttgatcaccaggattactcgt 68
Query: 67 ttttgcgatcac-aatactgaaattgcagcaa 97
|||||||||||| ||| ||||||||||||||
Sbjct: 69 ttttgcgatcacaaatcatgaaattgcagcaa 100
>RF00822;mir-274;AAQB01007682.1/34817-34703 7260:Drosophila
willistoni
Length = 115
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 9 tgcagtttcattttgtgaccgacactaacgggta 42
||||||||||||||||||||||||||||||||||
Sbjct: 9 tgcagtttcattttgtgaccgacactaacgggta 42
Score = 54.0 bits (27), Expect = 3e-07
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 60 tactcgtttttgcgatcac-aatactgaaattgcagcaa 97
||||||||||||||||||| ||| |||||||||||||||
Sbjct: 77 tactcgtttttgcgatcacaaattctgaaattgcagcaa 115
>RF00822;mir-274;AAPP01019289.1/330187-330287 7217:Drosophila
ananassae
Length = 101
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 9 tgcagtttcattttgtgaccgacactaacgggta 42
||||||||| ||||||||||||||||||||||||
Sbjct: 9 tgcagtttcgttttgtgaccgacactaacgggta 42
>RF00822;mir-274;AAPT01020611.1/127253-127143 7222:Drosophila
grimshawi
Length = 111
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 4 cgtgctgcagtttcattttgtgaccgacactaacgggta 42
|||| ||||||||| |||||||||||||||||||||||
Sbjct: 4 cgtgttgcagtttcggtttgtgaccgacactaacgggta 42
Score = 46.1 bits (23), Expect = 8e-05
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 60 tactcgtttttgcgatcac-aatactgaaattgca 93
||||||||||||||||||| ||| |||||||||||
Sbjct: 73 tactcgtttttgcgatcacaaattctgaaattgca 107
>RF00822;mir-274;AAPU01011627.1/22605-22713 7230:Drosophila
mojavensis
Length = 109
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 9 tgcagtttcattttgtgaccgacactaacgggta 42
||||||||| |||||||||||||||||||||||
Sbjct: 9 tgcagtttcggtttgtgaccgacactaacgggta 42
Score = 46.1 bits (23), Expect = 8e-05
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 60 tactcgtttttgcgatcac-aatactgaaattgca 93
||||||||||||||||||| ||| |||||||||||
Sbjct: 71 tactcgtttttgcgatcacaaattctgaaattgca 105
>RF00822;mir-274;AANI01017486.1/215294-215400 7244:Drosophila
virilis
Length = 107
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 9 tgcagtttcattttgtgaccgacactaacgggta 42
||||||||| |||||||||||||||||||||||
Sbjct: 9 tgcagtttcggtttgtgaccgacactaacgggta 42
Score = 46.1 bits (23), Expect = 8e-05
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 60 tactcgtttttgcgatcac-aatactgaaattgca 93
||||||||||||||||||| ||| |||||||||||
Sbjct: 69 tactcgtttttgcgatcacaaattctgaaattgca 103
