miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00757;mir-275;AAFS01000035.1/187021-187111 46245:Drosophila
pseudoobscura pseudoobscura
Length = 91
Score = 178 bits (90), Expect = 8e-45
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 aaagtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 aaagtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcagg 61
Query: 61 tacctgaagtagcgcgcgtggtgctagaca 90
||||||||||||||||||||||||||||||
Sbjct: 62 tacctgaagtagcgcgcgtggtgctagaca 91
>RF00757;mir-275;AAKO01000986.1/85073-85163 7238:Drosophila
sechellia
Length = 91
Score = 109 bits (55), Expect = 6e-24
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 1 aaagtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcagg 60
||||||||||||| |||||||||||||| |||||||||| ||||||| | ||||||||
Sbjct: 2 aaagtctcctaccttgcgcgctaatcagtgaccggggcttgttttttatatacagtcagg 61
Query: 61 tacctgaagtagcgcgcgtggtg 83
|||||||||||||||||||||||
Sbjct: 62 tacctgaagtagcgcgcgtggtg 84
>RF00757;mir-275;AAPP01015737.1/35785-35873 7217:Drosophila
ananassae
Length = 89
Score = 107 bits (54), Expect = 2e-23
Identities = 75/81 (92%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 3 agtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcaggta 62
||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct: 4 agtctcctaccttgcgcgctaatcagtgaccggggctggtttttgca--acagtcaggta 61
Query: 63 cctgaagtagcgcgcgtggtg 83
|||||||||||||||||||||
Sbjct: 62 cctgaagtagcgcgcgtggtg 82
>RF00757;mir-275;AANI01016257.1/59564-59470 7244:Drosophila
virilis
Length = 95
Score = 69.9 bits (35), Expect = 5e-12
Identities = 67/77 (87%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 10 taccatgcgcgctaatcagagaccggggctggtttt---ttcactgcagtcaggtacctg 66
|||| |||||||||||||| |||||||||||||||| | | ||||||||||||||
Sbjct: 11 taccgtgcgcgctaatcagtgaccggggctggttttggttatcccacagtcaggtacctg 70
Query: 67 aagtagcgcgcgtggtg 83
|||||||||||||||||
Sbjct: 71 aagtagcgcgcgtggtg 87
>RF00757;mir-275;AAQB01006829.1/458431-458336 7260:Drosophila
willistoni
Length = 96
Score = 63.9 bits (32), Expect = 3e-10
Identities = 71/84 (84%), Gaps = 5/84 (5%)
Strand = Plus / Plus
Query: 4 gtctcctaccatgcgcgctaatcagagaccggggctgg-----ttttttcactgcagtca 58
||||| |||| |||||||||||||| |||| |||||| ||| |||| | ||||||
Sbjct: 5 gtctcttaccttgcgcgctaatcagtgaccagggctgagtaattttattcaatacagtca 64
Query: 59 ggtacctgaagtagcgcgcgtggt 82
||||||||||||||||||||||||
Sbjct: 65 ggtacctgaagtagcgcgcgtggt 88
>RF00757;mir-275;AAWU01017837.1/19596-19687 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 92
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 52 gcagtcaggtacctgaagtagcgcgcgtg 80
|||||||||||||||||||||||||||||
Sbjct: 54 gcagtcaggtacctgaagtagcgcgcgtg 82
>RF00757;mir-275;AAGE02001651.1/96625-96717 7159:Aedes aegypti
(yellow fever mosquito)
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 52 gcagtcaggtacctgaagtagcgcgcgtg 80
|||||||||||||||||||||||||||||
Sbjct: 54 gcagtcaggtacctgaagtagcgcgcgtg 82
>RF00757;mir-275;ABKQ02010004.1/3068-3162 377270:Anopheles gambiae
S
Length = 95
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 52 gcagtcaggtacctgaagtagcgcgcgt 79
||||||||||||||||||||||||||||
Sbjct: 57 gcagtcaggtacctgaagtagcgcgcgt 84
>RF00757;mir-275;AADG05001619.1/13993-14083 7460:Apis mellifera
(honey bee)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 cagtcaggtacctgaagtagcgcgcg 78
||||||||||||||||||||||||||
Sbjct: 56 cagtcaggtacctgaagtagcgcgcg 81
>RF00757;mir-275;BABH01005296.1/11764-11850 7091:Bombyx mori
(domestic silkworm)
Length = 87
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 51 agtcaggtacctgaagtagcgcgcg 75
>RF00757;mir-275;AAZX01002044.1/14734-14647 7425:Nasonia
vitripennis (jewel wasp)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 53 agtcaggtacctgaagtagcgcgcg 77
>RF00757;mir-275;AAJJ01000649.1/41251-41341 7070:Tribolium
castaneum (red flour beetle)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 54 agtcaggtacctgaagtagcgcgcg 78
>RF00757;mir-275;ABJB010317264.1/3436-3346 6945:Ixodes scapularis
(black-legged tick)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcgcg 78
|||||||||||||||||||||||||
Sbjct: 54 agtcaggtacctgaagtagcgcgcg 78
>RF00757;mir-275;ABLF01003185.1/42778-42870 7029:Acyrthosiphon
pisum (pea aphid)
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 agtcaggtacctgaagtagcgcg 76
|||||||||||||||||||||||
Sbjct: 57 agtcaggtacctgaagtagcgcg 79
