miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00724;mir-282;AE014296.4/3251022-3251116 7227:Drosophila
melanogaster (fruit fly)
Length = 95
Score = 133 bits (67), Expect = 4e-31
Identities = 83/87 (95%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 3 ccttataaatctagcctctactaggctttgtctgtgcatttgaaaacccgatcagacata 62
|||| ||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct: 6 ccttctaaatctagcctctactaggctttgtctgtgcattcgaaagcc-gatcagacata 64
Query: 63 gcctataagaggttaggtgtaccaagg 89
|||||||||||||||||||||||||||
Sbjct: 65 gcctataagaggttaggtgtaccaagg 91
>RF00724;mir-282;AAPU01011488.1/130621-130527 7230:Drosophila
mojavensis
Length = 95
Score = 109 bits (55), Expect = 6e-24
Identities = 80/87 (91%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 3 ccttataaatctagcctctactaggctttgtctgtgcatttgaaaacccgatcagacata 62
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 6 ccttataaatctagcctctactaggctttgtctgtgcatttg-atataagatcagacata 64
Query: 63 gcctataagaggttaggtgtaccaagg 89
|||||| |||||||||||||| |||||
Sbjct: 65 gcctatgagaggttaggtgtagcaagg 91
>RF00724;mir-282;AAQB01009652.1/11236-11325 7260:Drosophila
willistoni
Length = 90
Score = 105 bits (53), Expect = 1e-22
Identities = 79/88 (89%), Gaps = 6/88 (6%)
Strand = Plus / Plus
Query: 3 ccttataaatctagcctctactaggctttgtctgtgcatttgaaaacccgatcagacata 62
|||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 6 ccttataaatctagcctctactaggctttgtctgtgcatttgga------ttcagacata 59
Query: 63 gcctataagaggttaggtgtaccaagga 90
|||||| |||||||||||||||||||||
Sbjct: 60 gcctatgagaggttaggtgtaccaagga 87
>RF00724;mir-282;AAPT01020493.1/70677-70773 7222:Drosophila
grimshawi
Length = 97
Score = 93.7 bits (47), Expect = 4e-19
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 3 ccttataaatctagcctctactaggctttgtctgtgca-tttgaaaacccgatcagacat 61
|||||||||||||||||||||||||||||||||||||| ||| || | |||||||||
Sbjct: 6 ccttataaatctagcctctactaggctttgtctgtgcactttttcaattcaatcagacat 65
Query: 62 agcctataagaggttaggtgtac 84
||||||| |||||||||||||||
Sbjct: 66 agcctatgagaggttaggtgtac 88
>RF00724;mir-282;AAGE02015805.1/19430-19533 7159:Aedes aegypti
(yellow fever mosquito)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 aatctagcctctactaggctttgtctgt 37
|||||||||||| |||||||||||||||
Sbjct: 13 aatctagcctctcctaggctttgtctgt 40
>RF00724;mir-282;ABKP02026817.1/6213-6306 377271:Anopheles gambiae
M
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 aatctagcctctactaggctttgtctgt 37
|||||||||||| |||||||||||||||
Sbjct: 13 aatctagcctcttctaggctttgtctgt 40
>RF00724;mir-282;AAJJ01000207.1/45613-45525 7070:Tribolium
castaneum (red flour beetle)
Length = 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 14 tagcctctactaggctttgtctgtgcatttg 44
|||||||| |||||||||||||||| |||||
Sbjct: 17 tagcctctcctaggctttgtctgtgaatttg 47
