miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 234 bits (118), Expect = 2e-61
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 ttgggggcagcaagctcgagacaacaactgcatagcatgcaagagcttgttggttgaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ttgggggcagcaagctcgagacaacaactgcatagcatgcaagagcttgttggttgaggg 65
Query: 61 tcataccgatggtgctcttgcaagttatgcagttgctgcctcaagcttcctgcctccc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 tcataccgatggtgctcttgcaagttatgcagttgctgcctcaagcttcctgcctccc 123
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 97.6 bits (49), Expect = 3e-20
Identities = 100/117 (85%)
Strand = Plus / Plus
Query: 1 ttgggggcagcaagctcgagacaacaactgcatagcatgcaagagcttgttggttgaggg 60
|||||||||||||||| ||| |||||||||| ||||||| ||||||| ||| |
Sbjct: 6 ttgggggcagcaagctagaggtggcaactgcataatttgcaagaaattgttggctgaaga 65
Query: 61 tcataccgatggtgctcttgcaagttatgcagttgctgcctcaagcttcctgcctcc 117
||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 66 tcataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 69.9 bits (35), Expect = 7e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 80 gcaagttatgcagttgctgcctcaagcttcctgcctccc 118
||||||||||||||||||||||||||||| |||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctccc 128
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 76 tcttgcaagttatgcagttgctgcctcaagcttcctgcctccc 118
||||||||||| |||||||| |||||||||||| |||||||||
Sbjct: 119 tcttgcaagttgtgcagttgttgcctcaagcttgctgcctccc 161
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 76 tcttgcaagttatgcagttgctgcctcaagcttcctgcctccc 118
|||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 125 tcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccc 167
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 60.0 bits (30), Expect = 7e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 76 tcttgcaagttatgcagttgctgcctcaagcttcctgcctcc 117
||||||||||| |||||||| |||||||||||| ||||||||
Sbjct: 117 tcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 76 tcttgcaagttatgcagttgctgcctcaagcttcctgcc 114
||||||||||| |||||||| |||||||||||| |||||
Sbjct: 191 tcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 76 tcttgcaagttatgcagttgctgcctcaagcttcctgcctccc 118
||||||||||| |||||||| || ||||||||| |||||||||
Sbjct: 80 tcttgcaagttgtgcagttgttgtctcaagcttgctgcctccc 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 76 tcttgcaagttatgcagttgctgcctcaagct 107
||||||||| ||||||||||||||||| ||||
Sbjct: 49 tcttgcaagatatgcagttgctgcctctagct 18
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 ggcagcaagctcgagacaacaactgca 32
||||||||||| |||||||||||||||
Sbjct: 118 ggcagcaagcttgagacaacaactgca 92
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 76 tcttgcaagttatgcagttgctgcctcaagcttcctgcc 114
||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 49 tcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 76 tcttgcaagttatgcagttgctgcctcaagcttcctgcctccc 118
||||||||||| |||||||| || ||||||||| |||||||||
Sbjct: 82 tcttgcaagttgtgcagttgttgtctcaagcttgctgcctccc 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 ggcagcaagctcgagacaacaactgca 32
||||||||||| |||||||||||||||
Sbjct: 120 ggcagcaagcttgagacaacaactgca 94
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 6 ggcagcaagctcgagacaacaactgcatagcatgcaaga 44
||||||||||| ||||||||||||||| ||| |||||||
Sbjct: 118 ggcagcaagcttgagacaacaactgcacagcttgcaaga 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 76 tcttgcaagttatgcagttgctgcctcaagcttcctgcctcc 117
||||||||| ||||||||||||| ||| ||||| | ||||||
Sbjct: 49 tcttgcaagatatgcagttgctgtctctagcttgccgcctcc 8
