miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00788;mir-287;AAFS01000718.1/2117-2027 46245:Drosophila
pseudoobscura pseudoobscura
Length = 91
Score = 151 bits (76), Expect = 2e-36
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 atgtgtgagtgtggggcctgaaattttgcacacatttacaataattgtaaatgtgttgaa 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 atgtgtgagtgtggggccttaaattttgcacacatttacaataattgtaaatgtgttgaa 71
Query: 61 aatcgtttgcacaactgtga 80
||||||||||||||||||||
Sbjct: 72 aatcgtttgcacaactgtga 91
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 30 acacatttacaataattgtaaatgtgt 56
||||||||||||| |||||||||||||
Sbjct: 67 acacatttacaattattgtaaatgtgt 41
>RF00788;mir-287;AAPP01015675.1/1283611-1283521 7217:Drosophila
ananassae
Length = 91
Score = 125 bits (63), Expect = 9e-29
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 18 ctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactg 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29 ctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactg 88
Query: 78 tga 80
|||
Sbjct: 89 tga 91
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 30 acacatttacaataattgtaaatgtgt 56
||||||||||||| |||||||||||||
Sbjct: 67 acacatttacaattattgtaaatgtgt 41
>RF00788;mir-287;AAPU01010664.1/17553-17645 7230:Drosophila
mojavensis
Length = 93
Score = 123 bits (62), Expect = 3e-28
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 19 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactgt 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactgt 91
Query: 79 ga 80
||
Sbjct: 92 ga 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 30 acacatttacaataattgtaaatgtgt 56
||||||||||||| |||||||||||||
Sbjct: 69 acacatttacaattattgtaaatgtgt 43
>RF00788;mir-287;AAPQ01007040.1/1493379-1493287 7220:Drosophila
erecta
Length = 93
Score = 113 bits (57), Expect = 3e-25
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 9 gtgtggggcctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgttt 68
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 gtgtgggctctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgttt 81
Query: 69 gcacaactg 77
|||| ||||
Sbjct: 82 gcacgactg 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 30 acacatttacaataattgtaaatgtgt 56
||||||||||||| |||||||||||||
Sbjct: 69 acacatttacaattattgtaaatgtgt 43
>RF00788;mir-287;AAQB01006734.1/267050-266959 7260:Drosophila
willistoni
Length = 92
Score = 105 bits (53), Expect = 8e-23
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 18 ctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaa 74
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 29 ctgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcacaa 85
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 30 acacatttacaataattgtaaatgtgt 56
|||||||||||||||||||||||||||
Sbjct: 67 acacatttacaataattgtaaatgtgt 41
>RF00788;mir-287;AAGH01003987.1/3230-3289 7240:Drosophila simulans
Length = 60
Score = 105 bits (53), Expect = 8e-23
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 20 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 72
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 4
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 30 acacatttacaataattgtaaatgtgt 56
||||||||||||| |||||||||||||
Sbjct: 20 acacatttacaattattgtaaatgtgt 46
>RF00788;mir-287;AAEU02000290.1/178244-178333 7245:Drosophila
yakuba
Length = 90
Score = 101 bits (51), Expect = 1e-21
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 18 ctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactg 77
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 28 ctgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgcatgactg 87
Query: 78 tga 80
|||
Sbjct: 88 tga 90
