miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00787;mir-288;AC093440.2/172834-172738 7227:Drosophila
melanogaster (fruit fly)
Length = 97
Score = 135 bits (68), Expect = 1e-31
Identities = 89/96 (92%)
Strand = Plus / Plus
Query: 1 ggccatgtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacg 60
|||||||||||||||||| | | || || | |||||||||||||||||||| ||||||||
Sbjct: 2 ggccatgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacg 61
Query: 61 ttggtttcatgtcgatttcatttcatgacacggccg 96
||||||||||||||||||||||||||||||||||||
Sbjct: 62 ttggtttcatgtcgatttcatttcatgacacggccg 97
>RF00787;mir-288;AANI01016239.1/44496-44592 7244:Drosophila
virilis
Length = 97
Score = 131 bits (66), Expect = 2e-30
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 7 gtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacgttggtt 66
|||||||||||| | | ||| |||||| |||||||||||||||| |||||||||||||||
Sbjct: 8 gtcgtaattagctgtgcacaacgttgctggcgataattaatgactttggtcacgttggtt 67
Query: 67 tcatgtcgatttcatttcatgacacggccg 96
||||||||||||||||||||||||||||||
Sbjct: 68 tcatgtcgatttcatttcatgacacggccg 97
>RF00787;mir-288;AAQB01006401.1/336794-336697 7260:Drosophila
willistoni
Length = 98
Score = 125 bits (63), Expect = 1e-28
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 34 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 95
Query: 94 ccg 96
|||
Sbjct: 96 ccg 98
