miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00853;mir-304;AAFS01000251.1/56138-56051 46245:Drosophila
pseudoobscura pseudoobscura
Length = 88
Score = 174 bits (88), Expect = 1e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgaggcatttgacacactcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgaggcatttgacacactcac 60
Query: 61 tttgcaactggagattgctcgaaactgc 88
||||||||||||||||||||||||||||
Sbjct: 61 tttgcaactggagattgctcgaaactgc 88
>RF00853;mir-304;AAPU01008564.1/42415-42503 7230:Drosophila
mojavensis
Length = 89
Score = 97.6 bits (49), Expect = 2e-20
Identities = 80/89 (89%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgaggc-atttgacacactca 59
|||||||||| ||||||||||||||||||||||||||||| | ||||||| ||||||
Sbjct: 1 gcagcattgattaatctcaatttgtaaatgtgagcgatttttaactatttgacgcactca 60
Query: 60 ctttgcaactggagattgctcgaaactgc 88
|||||||| |||||||||||||| |||||
Sbjct: 61 ctttgcaattggagattgctcgagactgc 89
>RF00853;mir-304;AAQB01006319.1/7240-7152 7260:Drosophila
willistoni
Length = 89
Score = 77.8 bits (39), Expect = 2e-14
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 5 cattgaataatctcaatttgtaaatgtgagcgattt-gaggcatttgacacactcacttt 63
|||||| ||||||||||||||||||||||||||||| | |||| || ||||||||||
Sbjct: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
Query: 64 gcaactggagattgctcga 82
|||| ||||||||||||||
Sbjct: 65 gcaattggagattgctcga 83
