miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 264 bits (133), Expect = 3e-70
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 1 gcatttgggcgggggcagcaagctagaggccggcaactgcataacttgcgataaacttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gcatttgggcgggggcagcaagctagaggccggcaactgcataacttgcgataaacttgt 61
Query: 61 tggaccatggtgtgctgatgattttaccgcaagttatgcagttgctgcctcaagcttgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tggaccatggtgtgctgatgattttaccgcaagttatgcagttgctgcctcaagcttgct 121
Query: 121 gcctccctttgcc 133
|||||||||||||
Sbjct: 122 gcctccctttgcc 134
Score = 44.1 bits (22), Expect = 5e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 83 tttaccgcaagttatgcagttg-ctgcctcaagcttgctgcc 123
|||| ||||||||||||||||| | ||||| |||||||||||
Sbjct: 56 tttatcgcaagttatgcagttgccggcctctagcttgctgcc 15
Score = 44.1 bits (22), Expect = 5e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 14 ggcagcaagctagaggccggcaactgcataacttgcgataaa 55
||||||||||| ||||| | ||||||||||||||||| ||||
Sbjct: 124 ggcagcaagcttgaggcag-caactgcataacttgcggtaaa 84
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 81.8 bits (41), Expect = 2e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 89 gcaagttatgcagttgctgcctcaagcttgctgcctccctttgcc 133
||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 85 gcaagttatgcagttgctgcctcaagcttcctgcctccctttgcc 129
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 75.8 bits (38), Expect = 1e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 89 gcaagttatgcagttgctgcctcaagcttgctgcctcc 126
||||||||||||||||||||||||||||||||||||||
Sbjct: 85 gcaagttatgcagttgctgcctcaagcttgctgcctcc 122
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 73.8 bits (37), Expect = 5e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 89 gcaagttatgcagttgctgcctcaagcttgctgcctccctttgcc 133
||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 123 gcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 167
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 73.8 bits (37), Expect = 5e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 97 tgcagttgctgcctcaagcttgctgcctccctttgcc 133
|||||||||||||||||||||||||||||||||||||
Sbjct: 137 tgcagttgctgcctcaagcttgctgcctccctttgcc 173
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 89 gcaagttatgcagttgctgcctcaagcttgctgcctccctttgcc 133
||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 84 gcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 128
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 89 gcaagttatgcagttgctgcctcaagcttgctgcctccctttgcc 133
||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 86 gcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 130
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 89 gcaagttatgcagttgctgcctcaagcttgctgcc 123
||||| ||||||||||||||||| |||||||||||
Sbjct: 45 gcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 60.0 bits (30), Expect = 8e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 89 gcaagttatgcagttgctgcctcaagcttgctgcctcc 126
||||||| |||||||| |||||||||||||||||||||
Sbjct: 121 gcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 97 tgcagttgctgcctcaagcttgctgcctccctttgcc 133
|||||||| || |||||||||||||||||||||||||
Sbjct: 92 tgcagttgttgtctcaagcttgctgcctccctttgcc 128
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 89 gcaagttatgcagttgctgcctcaagcttgctgcctcc 126
||||| ||||||||||||| ||| ||||||| ||||||
Sbjct: 45 gcaagatatgcagttgctgtctctagcttgccgcctcc 8
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 89 gcaagttatgcagttgctgcctcaagcttgctgcc 123
||||||| |||||||| ||||||||||||||||||
Sbjct: 195 gcaagttgtgcagttgttgcctcaagcttgctgcc 229
