miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00716;mir-3;AAFS01000371.1/25053-25121 46245:Drosophila
pseudoobscura pseudoobscura
Length = 69
Score = 135 bits (68), Expect = 7e-32
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 attatacgataaactttgttcagttttgccaacttgcttgcagcactgggtgaagtttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 attatacgataaactttgttcagttttgccaacttgcttgcagcactgggtgaagtttgt 61
Query: 61 cttataat 68
||||||||
Sbjct: 62 cttataat 69
>RF00716;mir-3;AAPP01018770.1/56527-56595 7217:Drosophila
ananassae
Length = 69
Score = 71.9 bits (36), Expect = 9e-13
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1 attatacgataaactttgttcagttttgccaacttgcttgcagcactgggtgaagtttgt 60
||||||||| |||| |||||| |||||||||| || || |||||||||||| ||||||||
Sbjct: 2 attatacgacaaaccttgttcggttttgccaatttcctagcagcactgggtaaagtttgt 61
Query: 61 cttataat 68
| ||||||
Sbjct: 62 cctataat 69
>RF00716;mir-3;AAQB01006291.1/71887-71803 7260:Drosophila
willistoni
Length = 85
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 attatacgataaactttgttcagttttgc 29
|||||| ||||||||||||||||||||||
Sbjct: 2 attatatgataaactttgttcagttttgc 30
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 44 cactgggtgaagtttgtcttataat 68
|||||||||||||||||||||||||
Sbjct: 61 cactgggtgaagtttgtcttataat 85
>RF00716;mir-3;AASV01026474.1/1205-1274 7240:Drosophila simulans
Length = 70
Score = 50.1 bits (25), Expect = 3e-06
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 attatacgataaactttgttcagttttgccaacttgcttgc-agcactgggtgaagtttg 59
||||||||| |||| |||||| |||||||||| || | || |||||||||| |||||||
Sbjct: 2 attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 61
Query: 60 tcttataat 68
|| ||||||
Sbjct: 62 tcctataat 70
>RF00716;mir-3;AANI01014795.1/38873-38947 7244:Drosophila virilis
Length = 75
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 attatacgataaactttgttcagttttgcca 31
|||||| | ||||||||||||||||||||||
Sbjct: 2 attatatggtaaactttgttcagttttgcca 32
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 cactgggtgaagtttgtcttataat 68
|||||||||||||||||| ||||||
Sbjct: 51 cactgggtgaagtttgtcgtataat 75
>RF00716;mir-3;AAPU01010225.1/183969-183894 7230:Drosophila
mojavensis
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 attatacgataaactttgttcagttttgcc 30
|||||| | |||||||||||||||||||||
Sbjct: 2 attataaggtaaactttgttcagttttgcc 31
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 cactgggtgaagtttgtcttataat 68
|||||||||||||||||| ||||||
Sbjct: 52 cactgggtgaagtttgtcgtataat 76
>RF00716;mir-3;AAPT01020768.1/62694-62618 7222:Drosophila
grimshawi
Length = 77
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 cactgggtgaagtttgtcttataat 68
|||||||||||||||||| ||||||
Sbjct: 53 cactgggtgaagtttgtcgtataat 77
