miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00717;mir-315;AAFS01000172.1/91075-90992 46245:Drosophila
pseudoobscura pseudoobscura
Length = 84
Score = 167 bits (84), Expect = 3e-41
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 cacttatctatttttgattgttgctcagaaagcccttataattaaccagttggctttcga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacttatctatttttgattgttgctcagaaagcccttataattaaccagttggctttcga 60
Query: 61 gcaattatcaaagccaaataagtg 84
||||||||||||||||||||||||
Sbjct: 61 gcaattatcaaagccaaataagtg 84
>RF00717;mir-315;AASU01006755.1/588-667 7240:Drosophila simulans
Length = 80
Score = 73.8 bits (37), Expect = 3e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1 cacttatctatttttgattgttgctcagaaagcccttataattaaccagttggcttt 57
||||||| || |||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1 cacttatataattttgattgttgctcagaaagcccttattgtttaccagttggcttt 57
>RF00717;mir-315;AAPQ01006582.1/536778-536860 7220:Drosophila
erecta
Length = 83
Score = 58.0 bits (29), Expect = 2e-08
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 1 cacttatctatttttgattgttgctcagaaagcccttataattaaccagttggctttcga 60
||||||| || |||||||||||||||||||||||| ||| || | ||| ||||||||||
Sbjct: 1 cacttatataattttgattgttgctcagaaagccc-tattatctaacagctggctttcga 59
Query: 61 gcaat 65
|||||
Sbjct: 60 gcaat 64
>RF00717;mir-315;AAPU01011669.1/1431-1347 7230:Drosophila
mojavensis
Length = 85
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 3 cttatctatttttgattgttgctcagaaagccc 35
||||| || ||||||||||||||||||||||||
Sbjct: 3 cttatataattttgattgttgctcagaaagccc 35
>RF00717;mir-315;AANI01017430.1/85121-85040 7244:Drosophila
virilis
Length = 82
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagccct 36
|||||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagccct 36
>RF00717;mir-315;ABLF01028780.1/3045-2960 7029:Acyrthosiphon pisum
(pea aphid)
Length = 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34
>RF00717;mir-315;AAZX01000470.1/15987-15906 7425:Nasonia
vitripennis (jewel wasp)
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34
>RF00717;mir-315;AADG05000960.1/7218-7138 7460:Apis mellifera
(honey bee)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34
>RF00717;mir-315;AAGE02021501.1/12488-12571 7159:Aedes aegypti
(yellow fever mosquito)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34
>RF00717;mir-315;AAAB01006400.1/15231-15314 180454:Anopheles
gambiae str. PEST
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34
>RF00717;mir-315;AAPT01020729.1/201657-201576 7222:Drosophila
grimshawi
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34
>RF00717;mir-315;AAJJ01004236.1/2476-2553 7070:Tribolium castaneum
(red flour beetle)
Length = 78
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 11 ttttgattgttgctcagaaagcc 33
