miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00818;mir-318;AAQB01008948.1/667-736 7260:Drosophila willistoni
Length = 70
Score = 91.7 bits (46), Expect = 1e-18
Identities = 64/69 (92%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 1 tttatgggatgcaccaagttcagttttgtcacatttc--gagcatcactgggctttgttt 58
|||||||||| ||||||||||||||||||| |||| | |||||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcgcattccacgagcatcactgggctttgttt 60
Query: 59 atctcataa 67
|||||||||
Sbjct: 61 atctcataa 69
>RF00818;mir-318;AAGH01004927.1/3240-3173 7240:Drosophila simulans
Length = 68
Score = 81.8 bits (41), Expect = 1e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1 tttatgggatgcaccaagttcagttttgtcacatttcgagcatcactgggctttgtttat 60
|||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacactttaagcatcactgggctttgtttat 60
Query: 61 ctcat 65
|||||
Sbjct: 61 ctcat 65
>RF00818;mir-318;AAPU01010980.1/46750-46818 7230:Drosophila
mojavensis
Length = 69
Score = 81.8 bits (41), Expect = 1e-15
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatgcaccaagttcagttttgtcacatttcga-gcatcactgggctttgttta 59
|||||||||| ||| |||||||||||||||| || || | ||||||||||||||||||||
Sbjct: 1 tttatgggatacactaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
Query: 60 tctcataag 68
|||||||||
Sbjct: 61 tctcataag 69
>RF00818;mir-318;AAPP01019505.1/87887-87819 7217:Drosophila
ananassae
Length = 69
Score = 71.9 bits (36), Expect = 9e-13
Identities = 49/52 (94%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 18 gttcagttttgtcacattt-cgagcatcactgggctttgtttatctcataag 68
|||||||| |||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 18 gttcagttgtgtcacttttgcgagcatcactgggctttgtttatctcataag 69
