miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01944;mir-2518;AAFS01004297.1/5145-5043 46245:Drosophila
pseudoobscura pseudoobscura
Length = 103
Score = 133 bits (67), Expect = 4e-31
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 8 cacacacacacgaccggatcgaacccgttgtgaatcgaacttggttcgagttcgagcagc 67
|||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 18 cacacacacacgaccgtttcgaccccgttgcgaatcgaacttggttcgagttcgagcagc 77
Query: 68 gggtcgatccgagccatagccca 90
|||||||||||||||||||||||
Sbjct: 78 gggtcgatccgagccatagccca 100
>RF01944;mir-2518;AADE01009281.1/13064-13168 46245:Drosophila
pseudoobscura pseudoobscura
Length = 105
Score = 119 bits (60), Expect = 6e-27
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 11 acacacacgaccggatcgaacccgttgtgaatcgaacttggttcgagttcgagcagcggg 70
|||||||||| ||||||||||| |||| || |||||||||||||||| ||||||||||||
Sbjct: 23 acacacacgaacggatcgaacctgttgcgagtcgaacttggttcgagctcgagcagcggg 82
Query: 71 tcgatccgagccatagccca 90
||||||||||||||||||||
Sbjct: 83 tcgatccgagccatagccca 102
>RF01944;mir-2518;AAFS01002641.1/8771-8667 46245:Drosophila
pseudoobscura pseudoobscura
Length = 105
Score = 117 bits (59), Expect = 2e-26
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 8 cacacacacacgaccggatcgaacccgttgtgaatcgaacttggttcgagttcgagcagc 67
|||||| |||||| |||||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct: 20 cacacatacacgaacggatcgaacccgttgcgaatctaacttggttcgagttcgagcaac 79
Query: 68 gggtcgatccgagccatagccca 90
|||||||||| ||||||||||||
Sbjct: 80 gggtcgatccaagccatagccca 102
>RF01944;mir-2518;AADE01004223.1/2531-2427 46245:Drosophila
pseudoobscura pseudoobscura
Length = 105
Score = 117 bits (59), Expect = 2e-26
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 8 cacacacacacgaccggatcgaacccgttgtgaatcgaacttggttcgagttcgagcagc 67
||||||||||||||||||||||| |||||| | |||||||| ||||||||||||||||
Sbjct: 20 cacacacacacgaccggatcgaatccgttgcgtatcgaactacgttcgagttcgagcagt 79
Query: 68 gggtcgatccgagccatagccca 90
|||||||||||||||||||||||
Sbjct: 80 gggtcgatccgagccatagccca 102
>RF01944;mir-2518;AAIZ01013320.1/1017-1121 7234:Drosophila
persimilis
Length = 105
Score = 101 bits (51), Expect = 1e-21
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 8 cacacacacacgaccggatcgaacccgttgtgaatcgaacttggttcgagttcgagcagc 67
||||||||||||| |||||||| ||||||| | ||||||||||||||||| |||||| ||
Sbjct: 20 cacacacacacgatcggatcgagcccgttgcgtatcgaacttggttcgagctcgagcggc 79
Query: 68 gggtcgatccgagccatagccca 90
||||||||||| ||||| |||||
Sbjct: 80 gggtcgatccgtgccattgccca 102
>RF01944;mir-2518;AAIZ01003540.1/11397-11297 7234:Drosophila
persimilis
Length = 101
Score = 93.7 bits (47), Expect = 4e-19
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 24 gatcgaacccgttgtgaatcgaacttggttcgagttcgagcagcgggtcgatccgagcca 83
|||||||||||||| | ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 32 gatcgaacccgttgcgtatcgaacttggttcgagctcgagcagcgggtcgatccgtgcca 91
Query: 84 tagccca 90
| |||||
Sbjct: 92 ttgccca 98
>RF01944;mir-2518;AADE01008367.1/2588-2708 46245:Drosophila
pseudoobscura pseudoobscura
Length = 121
Score = 81.8 bits (41), Expect = 1e-15
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 22 cggatcgaacccgttgtgaatcgaacttggttcgagttcgagcagcgggtcgatccg 78
|||||||| ||||||| ||||||||||||||||||| |||||| |||||||||||||
Sbjct: 50 cggatcgagcccgttgcgaatcgaacttggttcgagctcgagcggcgggtcgatccg 106
