miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01944;mir-2518;AAFS01004297.1/5145-5043 46245:Drosophila
pseudoobscura pseudoobscura
Length = 103
Score = 115 bits (58), Expect = 1e-25
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 38 tcgaacccgttgcgaatcgaacttggtttgagttcgagcagcgggtcgatccgagccata 97
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 36 tcgaccccgttgcgaatcgaacttggttcgagttcgagcagcgggtcgatccgagccata 95
Query: 98 gcccag 103
||||||
Sbjct: 96 gcccag 101
>RF01944;mir-2518;AADE01009281.1/13064-13168 46245:Drosophila
pseudoobscura pseudoobscura
Length = 105
Score = 111 bits (56), Expect = 2e-24
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 34 cggatcgaacccgttgcgaatcgaacttggtttgagttcgagcagcgggtcgatccgagc 93
||||||||||| ||||||| |||||||||||| ||| |||||||||||||||||||||||
Sbjct: 34 cggatcgaacctgttgcgagtcgaacttggttcgagctcgagcagcgggtcgatccgagc 93
Query: 94 catagcccagcc 105
||||||||||||
Sbjct: 94 catagcccagcc 105
>RF01944;mir-2518;AAFS01002641.1/8771-8667 46245:Drosophila
pseudoobscura pseudoobscura
Length = 105
Score = 111 bits (56), Expect = 2e-24
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 34 cggatcgaacccgttgcgaatcgaacttggtttgagttcgagcagcgggtcgatccgagc 93
|||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |||
Sbjct: 34 cggatcgaacccgttgcgaatctaacttggttcgagttcgagcaacgggtcgatccaagc 93
Query: 94 catagcccagcc 105
||||||||||||
Sbjct: 94 catagcccagcc 105
>RF01944;mir-2518;AAIZ01003540.1/11397-11297 7234:Drosophila
persimilis
Length = 101
Score = 99.6 bits (50), Expect = 7e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 36 gatcgaacccgttgcgaatcgaacttggtttgagttcgagcagcgggtcgatccgagcca 95
|||||||||||||||| ||||||||||||| ||| |||||||||||||||||||| ||||
Sbjct: 32 gatcgaacccgttgcgtatcgaacttggttcgagctcgagcagcgggtcgatccgtgcca 91
Query: 96 tagcccagcc 105
| ||||||||
Sbjct: 92 ttgcccagcc 101
>RF01944;mir-2518;AADE01004223.1/2531-2427 46245:Drosophila
pseudoobscura pseudoobscura
Length = 105
Score = 99.6 bits (50), Expect = 7e-21
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 31 gaccggatcgaacccgttgcgaatcgaacttggtttgagttcgagcagcgggtcgatccg 90
|||||||||||| |||||||| |||||||| ||| |||||||||||| |||||||||||
Sbjct: 31 gaccggatcgaatccgttgcgtatcgaactacgttcgagttcgagcagtgggtcgatccg 90
Query: 91 agccatagcccagc 104
||||||||||||||
Sbjct: 91 agccatagcccagc 104
>RF01944;mir-2518;AAIZ01013320.1/1017-1121 7234:Drosophila
persimilis
Length = 105
Score = 87.7 bits (44), Expect = 3e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 34 cggatcgaacccgttgcgaatcgaacttggtttgagttcgagcagcgggtcgatccgagc 93
|||||||| ||||||||| ||||||||||||| ||| |||||| ||||||||||||| ||
Sbjct: 34 cggatcgagcccgttgcgtatcgaacttggttcgagctcgagcggcgggtcgatccgtgc 93
Query: 94 catagcccagcc 105
||| ||||||||
Sbjct: 94 cattgcccagcc 105
>RF01944;mir-2518;AADE01008367.1/2588-2708 46245:Drosophila
pseudoobscura pseudoobscura
Length = 121
Score = 81.8 bits (41), Expect = 2e-15
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 34 cggatcgaacccgttgcgaatcgaacttggtttgagttcgagcagcgggtcgatccg 90
|||||||| ||||||||||||||||||||||| ||| |||||| |||||||||||||
Sbjct: 50 cggatcgagcccgttgcgaatcgaacttggttcgagctcgagcggcgggtcgatccg 106
