miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00716;mir-3;AASW01005437.1/411-478 7240:Drosophila simulans
          Length = 68

 Score =  127 bits (64), Expect = 2e-29
 Identities = 67/68 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gatcctgggatgcatcttgtgcagttatgtttcaatctcacatcactgggcaaagtgtgt 60
          ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1  gatcctgggatgcatcttgtgcagttatgttccaatctcacatcactgggcaaagtgtgt 60

                  
Query: 61 ctcaagat 68
          ||||||||
Sbjct: 61 ctcaagat 68




>RF00716;mir-3;AADE01001895.1/2973-3045 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 73

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  gatcctgggatgcatcttgtgcagttatgt 30
          ||||||||||||||| ||||||||||||||
Sbjct: 1  gatcctgggatgcattttgtgcagttatgt 30



 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 catcactgggcaaagtgtgtctca 64
          ||||||||||||||||||||||||
Sbjct: 46 catcactgggcaaagtgtgtctca 69




>RF00716;mir-3;AAQB01006291.1/71735-71659 7260:Drosophila
          willistoni
          Length = 77

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 36 tctcacatcactgggcaaagtgtgtctca 64
          |||| ||||||||||||||||||||||||
Sbjct: 45 tctctcatcactgggcaaagtgtgtctca 73



 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 6  tgggatgcatcttgtgcagttatgt 30
          |||||||||| ||||||||||||||
Sbjct: 6  tgggatgcattttgtgcagttatgt 30




>RF00716;mir-3;AAPT01006453.1/2658-2730 7222:Drosophila grimshawi
          Length = 73

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 41 catcactgggcaaagtgtgtctcaa 65
          |||||||||||||||||||||||||
Sbjct: 46 catcactgggcaaagtgtgtctcaa 70




>RF00716;mir-3;AANI01014795.1/39022-39093 7244:Drosophila virilis
          Length = 72

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 41 catcactgggcaaagtgtgtctcaa 65
          |||||||||||||||||||||||||
Sbjct: 45 catcactgggcaaagtgtgtctcaa 69




>RF00716;mir-3;AAPU01010225.1/183837-183766 7230:Drosophila
          mojavensis
          Length = 72

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 41 catcactgggcaaagtgtgtctcaa 65
          |||||||||||||||||||||||||
Sbjct: 45 catcactgggcaaagtgtgtctcaa 69




>RF00716;mir-3;AAPP01018770.1/56641-56712 7217:Drosophila
          ananassae
          Length = 72

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 41 catcactgggcaaagtgtgtctca 64
          ||||||||||||||||||||||||
Sbjct: 45 catcactgggcaaagtgtgtctca 68