miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AAPT01019387.1/166139-166214 7222:Drosophila
          grimshawi
          Length = 76

 Score =  135 bits (68), Expect = 9e-32
 Identities = 74/76 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccacgtctaccctgtagatccgaatttgttttatactagctttaaggacaaattcggttc 60
          |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 1  ccacgtctaccctgtagatccgaatttgttgtacactagctttaaggacaaattcggttc 60

                          
Query: 61 tagagaggtttgtgtg 76
          ||||||||||||||||
Sbjct: 61 tagagaggtttgtgtg 76




>RF00104;mir-10;AAQB01008633.1/164536-164458 7260:Drosophila
          willistoni
          Length = 79

 Score =  115 bits (58), Expect = 8e-26
 Identities = 68/70 (97%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                      
Query: 3  acgtctaccctgtagatccgaatttgttttatactag-ctttaaggacaaattcggttct 61
          |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 3  acgtctaccctgtagatccgaatttgttttatactagtttttaaggacaaattcggttct 62

                    
Query: 62 agagaggttt 71
          ||||||||||
Sbjct: 63 agagaggttt 72




>RF00104;mir-10;AAPU01011054.1/176581-176658 7230:Drosophila
          mojavensis
          Length = 78

 Score =  113 bits (57), Expect = 3e-25
 Identities = 72/77 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  ccacgtctaccctgtagatccgaatttgttttatactagctttaaggacaaattcggttc 60
          |||||||||||||||||||||||||||||| ||   ||||||||||||||||||||||||
Sbjct: 1  ccacgtctaccctgtagatccgaatttgttgtaccatagctttaaggacaaattcggttc 60

                           
Query: 61 tagagaggtttgtgtgg 77
          ||||||||||| |||||
Sbjct: 61 tagagaggtttatgtgg 77




>RF00104;mir-10;AAJJ01000198.1/34838-34768 7070:Tribolium
          castaneum (red flour beetle)
          Length = 71

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 47 gacaaattcggttctagagaggtttgtgtg 76
          ||||||||||||||||||||||||||||||
Sbjct: 42 gacaaattcggttctagagaggtttgtgtg 71




>RF00104;mir-10;ABKQ02021837.1/5843-5769 377270:Anopheles gambiae
          S
          Length = 75

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 48 acaaattcggttctagagaggtttgtgtg 76
          |||||||||||||||||||||||||||||
Sbjct: 47 acaaattcggttctagagaggtttgtgtg 75




>RF00104;mir-10;ABJB011126277.1/3833-3903 6945:Ixodes scapularis
          (black-legged tick)
          Length = 71

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 48 acaaattcggttctagagaggtttgtgtg 76
          |||||||||||||||||||||||||||||
Sbjct: 43 acaaattcggttctagagaggtttgtgtg 71



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 6  tctaccctgtagatccgaatttgt 29
          ||||||||||||||||||||||||
Sbjct: 6  tctaccctgtagatccgaatttgt 29




>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
          (African savanna elephant)
          Length = 76

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 8  taccctgtagatccgaatttgt 29
          ||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgt 29




>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
          (chicken)
          Length = 75

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 8  taccctgtagatccgaatttgt 29
          ||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgt 29




>RF00104;mir-10;AC145793.2/105735-105809 8364:Xenopus (Silurana)
          tropicalis (western clawed frog)
          Length = 75

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 8  taccctgtagatccgaatttgt 29
          ||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgt 29




>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
          Length = 76

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 8  taccctgtagatccgaatttgt 29
          ||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgt 29




>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
          (ghost shark)
          Length = 76

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 8  taccctgtagatccgaatttgt 29
          ||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgt 29




>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 75

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 8  taccctgtagatccgaatttgt 29
          ||||||||||||||||||||||
Sbjct: 8  taccctgtagatccgaatttgt 29




>RF00104;mir-10;AC165428.1/216964-216881 7668:Strongylocentrotus
          purpuratus
          Length = 84

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 9  accctgtagatccgaatttgt 29
          |||||||||||||||||||||
Sbjct: 9  accctgtagatccgaatttgt 29




>RF00104;mir-10;CAAB01000183.1/83579-83654 31033:Takifugu rubripes
          Length = 76

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 9  accctgtagatccgaatttgt 29
          |||||||||||||||||||||
Sbjct: 9  accctgtagatccgaatttgt 29




>RF00104;mir-10;AY303234.1/14458-14526 39110:Sphoeroides nephelus
          Length = 69

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 9  accctgtagatccgaatttgt 29
          |||||||||||||||||||||
Sbjct: 9  accctgtagatccgaatttgt 29




>RF00104;mir-10;EF594314.1/41875-41950 8153:Haplochromis burtoni
          Length = 76

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 9  accctgtagatccgaatttgt 29
          |||||||||||||||||||||
Sbjct: 9  accctgtagatccgaatttgt 29