miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00047;mir-2;AE014297.2/11243334-11243266 7227:Drosophila
melanogaster (fruit fly)
Length = 69
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 5 taactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccattttga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccattttga 60
Query: 65 tgagtttcg 73
|||||||||
Sbjct: 61 tgagtttcg 69
>RF00047;mir-2;AAPU01011022.1/363976-364043 7230:Drosophila
mojavensis
Length = 68
Score = 73.8 bits (37), Expect = 3e-13
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 5 taactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccattttga 64
|||||| |||| |||||||||||||| | | |||||| | ||||||||||||||||||||
Sbjct: 1 taactcttcaaggggttgtgaaatgtagcc-attatcaagtcatatcacagccattttga 59
Query: 65 tgagtttcg 73
|||||||||
Sbjct: 60 tgagtttcg 68
>RF00047;mir-2;AAIZ01000548.1/11342-11275 7234:Drosophila
persimilis
Length = 68
Score = 60.0 bits (30), Expect = 4e-09
Identities = 55/62 (88%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 12 tcaaagggttgtgaaatgtcgactattatctactcatatcacagccattttgatgagttt 71
||||| ||||||||||||| | | ||||| | |||||||||||||||||||||||||||
Sbjct: 8 tcaaacggttgtgaaatgttgcat-ttatcaaatcatatcacagccattttgatgagttt 66
Query: 72 cg 73
||
Sbjct: 67 cg 68
>RF00047;mir-2;AADG05000005.1/25311-25372 7460:Apis mellifera
(honey bee)
Length = 62
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgag 68
||||||||||||||||||||||||
Sbjct: 34 tcatatcacagccattttgatgag 57
>RF00047;mir-2;AAQB01008610.1/296699-296630 7260:Drosophila
willistoni
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 40 tctactcatatcacagccattttgatgagttt 71
|||| |||||||||||||||||||| ||||||
Sbjct: 37 tctattcatatcacagccattttgacgagttt 68
>RF00047;mir-2;AAIZ01004769.1/8926-8993 7234:Drosophila persimilis
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 44 ctcatatcacagccattttgatgagttt 71
||||||||||||||||||||| ||||||
Sbjct: 39 ctcatatcacagccattttgacgagttt 66
>RF00047;mir-2;AAWU01020422.1/10782-10706 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 77
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 49 tcatatcacagccattttgacgagttt 75
>RF00047;mir-2;AAAB01008807.1/11606679-11606749 180454:Anopheles
gambiae str. PEST
Length = 71
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69
>RF00047;mir-2;AAPP01016552.1/52617-52684 7217:Drosophila
ananassae
Length = 68
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>RF00047;mir-2;AAKO01003387.1/9775-9842 7238:Drosophila sechellia
Length = 68
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>RF00047;mir-2;AAIZ01000548.1/11193-11126 7234:Drosophila
persimilis
Length = 68
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>RF00047;mir-2;AASW01010650.1/86-152 7240:Drosophila simulans
Length = 67
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 39 tcatatcacagccattttgacgagttt 65
>RF00047;mir-2;AAPU01009688.1/35644-35576 7230:Drosophila
mojavensis
Length = 69
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>RF00047;mir-2;AANI01016575.1/52926-52998 7244:Drosophila virilis
Length = 73
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 45 tcatatcacagccattttgacgagttt 71
>RF00047;mir-2;AANI01017189.1/98316-98382 7244:Drosophila virilis
Length = 67
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 39 tcatatcacagccattttgacgagttt 65
>RF00047;mir-2;AAGE02012793.1/17697-17627 7159:Aedes aegypti
(yellow fever mosquito)
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagtt 70
|||||||||||||||||||| |||||
Sbjct: 43 tcatatcacagccattttgacgagtt 68
>RF00047;mir-2;AAQB01006881.1/26688-26760 7260:Drosophila
willistoni
Length = 73
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagtt 70
|||||||||||||||||||| |||||
Sbjct: 45 tcatatcacagccattttgacgagtt 70
