miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00661;mir-31;AAGH01011800.1/12196-12109 7240:Drosophila
          simulans
          Length = 88

 Score =  174 bits (88), Expect = 1e-43
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tccgttggtaaattggcaagatgtcggcatagctgacgttgaaaagcgattttgaagagc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tccgttggtaaattggcaagatgtcggcatagctgacgttgaaaagcgattttgaagagc 60

                                      
Query: 61 gctatgctgcatctagtcagttgttcaa 88
          ||||||||||||||||||||||||||||
Sbjct: 61 gctatgctgcatctagtcagttgttcaa 88




>RF00661;mir-31;AAPQ01007042.1/187291-187204 7220:Drosophila
          erecta
          Length = 88

 Score =  159 bits (80), Expect = 8e-39
 Identities = 86/88 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  tccgttggtaaattggcaagatgtcggcatagctgacgttgaaaagcgattttgaagagc 60
          |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 1  tccgttggtaaattggcaagatgtcggcatagctgacgttgaaaagcgcttttaaagagc 60

                                      
Query: 61 gctatgctgcatctagtcagttgttcaa 88
          ||||||||||||||||||||||||||||
Sbjct: 61 gctatgctgcatctagtcagttgttcaa 88




>RF00661;mir-31;AAIZ01001980.1/15086-15173 7234:Drosophila
          persimilis
          Length = 88

 Score =  121 bits (61), Expect = 2e-27
 Identities = 79/85 (92%)
 Strand = Plus / Plus

                                                                      
Query: 4  gttggtaaattggcaagatgtcggcatagctgacgttgaaaagcgattttgaagagcgct 63
          ||||||||||||||||||||||||||||||||| ||||||||||||| ||  ||| ||||
Sbjct: 4  gttggtaaattggcaagatgtcggcatagctgaagttgaaaagcgatctttgagaacgct 63

                                   
Query: 64 atgctgcatctagtcagttgttcaa 88
          ||||||||||||||||||| |||||
Sbjct: 64 atgctgcatctagtcagttattcaa 88




>RF00661;mir-31;AANI01014909.1/166793-166706 7244:Drosophila
          virilis
          Length = 88

 Score = 91.7 bits (46), Expect = 1e-18
 Identities = 70/78 (89%)
 Strand = Plus / Plus

                                                                      
Query: 11 aattggcaagatgtcggcatagctgacgttgaaaagcgattttgaagagcgctatgctgc 70
          ||||||||||||||||||||||||||||||  ||||||  |||  | |||||||||||||
Sbjct: 11 aattggcaagatgtcggcatagctgacgtttgaaagcgcatttttatagcgctatgctgc 70

                            
Query: 71 atctagtcagttgttcaa 88
          |||||||||||| |||||
Sbjct: 71 atctagtcagttattcaa 88




>RF00661;mir-31;AAPU01010140.1/40129-40215 7230:Drosophila
          mojavensis
          Length = 87

 Score = 83.8 bits (42), Expect = 4e-16
 Identities = 70/78 (89%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 aattggcaagatgtcggcatagctgacgttgaaaagcgattttgaagagcgctatgctgc 70
          ||||||||||||||||||||||||||||||  ||||||   ||| | |||||||||||||
Sbjct: 11 aattggcaagatgtcggcatagctgacgtttcaaagcg-cattgcatagcgctatgctgc 69

                            
Query: 71 atctagtcagttgttcaa 88
          |||||||||||| |||||
Sbjct: 70 atctagtcagttattcaa 87




>RF00661;mir-31;AAQB01006276.1/72264-72183 7260:Drosophila
          willistoni
          Length = 82

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 11 aattggcaagatgtcggcatagctga 36
          ||||||||||||||||||||||||||
Sbjct: 11 aattggcaagatgtcggcatagctga 36



 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 58 agcgctatgctgcatctagtcagtt 82
          |||||||||||||||||||||||||
Sbjct: 52 agcgctatgctgcatctagtcagtt 76




>RF00661;mir-31;AAZO01004538.1/561-481 121224:Pediculus humanus
          corporis (human body louse)
          Length = 81

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 ggcaagatgtcggcatagctga 36
          ||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36




>RF00661;mir-31;AAZX01004302.1/23296-23375 7425:Nasonia
          vitripennis (jewel wasp)
          Length = 80

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 ggcaagatgtcggcatagctga 36
          ||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36




>RF00661;mir-31;AADG05006757.1/17977-18057 7460:Apis mellifera
          (honey bee)
          Length = 81

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 ggcaagatgtcggcatagctga 36
          ||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36




>RF00661;mir-31;AAJJ01000269.1/62248-62171 7070:Tribolium
          castaneum (red flour beetle)
          Length = 78

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 ggcaagatgtcggcatagctga 36
          ||||||||||||||||||||||
Sbjct: 15 ggcaagatgtcggcatagctga 36