miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00858;mir-306;AC093097.1/71496-71578 7227:Drosophila
melanogaster (fruit fly)
Length = 83
Score = 157 bits (79), Expect = 3e-38
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 2 ccactcgatggctcaggtacttagtgactctcaatgcctttgacattttgggggtcactc 61
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ccactcgatggctcaggtacttagtgactctcaatgcttttgacattttgggggtcactc 60
Query: 62 tgtgcctgtgctgccagtgggac 84
|||||||||||||||||||||||
Sbjct: 61 tgtgcctgtgctgccagtgggac 83
>RF00858;mir-306;AAPP01015742.1/196327-196245 7217:Drosophila
ananassae
Length = 83
Score = 83.8 bits (42), Expect = 3e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 12 gctcaggtacttagtgactctcaatgcctttgacattttgggggtcactctgtgcctg 69
||||||||||||||||||||||||||| |||||||||||||| | |||| ||||||||
Sbjct: 11 gctcaggtacttagtgactctcaatgcatttgacattttgggagccactttgtgcctg 68
>RF00858;mir-306;AAFS01000359.1/26008-26091 46245:Drosophila
pseudoobscura pseudoobscura
Length = 84
Score = 69.9 bits (35), Expect = 5e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 11 ggctcaggtacttagtgactctcaatgcctttgacattttgggggtcactctgtgcctg 69
|||||||||||||||||||||||||||| || ||||| ||| | ||| |||||||||||
Sbjct: 11 ggctcaggtacttagtgactctcaatgctttcgacatcttgagagtctctctgtgcctg 69
>RF00858;mir-306;AAPT01019705.1/15024-15115 7222:Drosophila
grimshawi
Length = 92
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 gctcaggtacttagtgactctcaat 36
|||||||||||||||||||||||||
Sbjct: 11 gctcaggtacttagtgactctcaat 35
>RF00858;mir-306;AAPU01010522.1/87951-88041 7230:Drosophila
mojavensis
Length = 91
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 gctcaggtacttagtgactctcaat 36
|||||||||||||||||||||||||
Sbjct: 11 gctcaggtacttagtgactctcaat 35
>RF00858;mir-306;AAQB01008360.1/26170-26086 7260:Drosophila
willistoni
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 gctcaggtacttagtgactctcaa 35
||||||||||||||||||||||||
Sbjct: 11 gctcaggtacttagtgactctcaa 34
>RF00858;mir-306;AAQB01009472.1/21237-21153 7260:Drosophila
willistoni
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 gctcaggtacttagtgactctcaa 35
||||||||||||||||||||||||
Sbjct: 11 gctcaggtacttagtgactctcaa 34
