miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 250 bits (126), Expect = 6e-66
Identities = 173/184 (94%), Gaps = 6/184 (3%)
Strand = Plus / Plus
Query: 4 ggttggttttaatttg-agacaggcat-aggcagagcatgggatggggccatcaacaaag 61
|||||||||| ||||| ||||||| || ||||||||||||||||||||| ||||||||||
Sbjct: 1 ggttggttttgatttggagacagggatgaggcagagcatgggatggggctatcaacaaag 60
Query: 62 tggagggactagcttgtgagtgcagaaagaaggtgccagtggctccctggtgaaacgatg 121
|||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||
Sbjct: 61 tggagggactagcttgtgag-gcagaaagaaggtgccagtggttccctggcgaaacgatg 119
Query: 122 atggcagtgttgttgctccctcccctgcactgcctcttccctggctcctccgatccccca 181
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 120 atggcagtgttgttgctccctcccctgcactgcctcttccctgg---ctccgatccccca 176
Query: 182 ccgt 185
||||
Sbjct: 177 ccgt 180
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 151 bits (76), Expect = 4e-36
Identities = 141/162 (87%), Gaps = 13/162 (8%)
Strand = Plus / Plus
Query: 33 cagagcatgggatggggccatcaacaaagtggagggactagcttgtgagtgcagaaagaa 92
||||| |||||||||||||||||||||| |||||||||||||||||||| ||| ||||
Sbjct: 32 cagagaatgggatggggccatcaacaaaatggagggactagcttgtgag-gcaaaaaggt 90
Query: 93 g---------gtgccagtggctccctggtgaaacgatgatggcagtgttgttgctccctc 143
| ||||| ||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 91 gctactgccggtgccggtgcctccctggtgaaacgaagatggcagtgttgttgctccctc 150
Query: 144 ccctgcactgcctcttccctggctcctccgatcccccaccgt 185
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 151 ccctgcactgcctcttccctgg---ctccgatcccccaccgt 189
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 83.8 bits (42), Expect = 8e-16
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 130 gttgttgctccctcccctgcactgcctcttccctggctcctc 171
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gttgttgctccctcccctgcactgcctcttccctggctcctc 167
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 81.8 bits (41), Expect = 3e-15
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 129 tgttgttgctccctcccctgcactgcctcttccctggctcc 169
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tgttgttgctccctcccctgcactgcctcttccctggctcc 165
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 30 aggcagagcatgggatggggccatcaaca 58
||||||||||||||||||||| |||||||
Sbjct: 28 aggcagagcatgggatggggctatcaaca 56
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 143 cccctgcactgcctcttccctggctc 168
||||||||||||||||||||||||||
Sbjct: 82 cccctgcactgcctcttccctggctc 107
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 143 cccctgcactgcctcttccctggct 167
|||||||||||||||||||||||||
Sbjct: 78 cccctgcactgcctcttccctggct 102
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 147 tgcactgcctcttccctggctcc 169
|||||||||||||||||||||||
Sbjct: 88 tgcactgcctcttccctggctcc 110
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 147 tgcactgcctcttccctggctc 168
||||||||||||||||||||||
Sbjct: 119 tgcactgcctcttccctggctc 140
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 147 tgcactgcctcttccctggctc 168
||||||||||||||||||||||
Sbjct: 88 tgcactgcctcttccctggctc 109
