miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00717;mir-315;AAPQ01006582.1/536778-536860 7220:Drosophila
erecta
Length = 83
Score = 109 bits (55), Expect = 5e-24
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 cacttatataattttgattgttgctcagaaagccct-tattgtaccagttggctttcgag 59
|||||||||||||||||||||||||||||||||||| | | || ||| |||||||||||
Sbjct: 1 cacttatataattttgattgttgctcagaaagccctattatctaacagctggctttcgag 60
Query: 60 caataattgaaaccagataagtg 82
|||||||||||||||||||||||
Sbjct: 61 caataattgaaaccagataagtg 83
>RF00717;mir-315;AASU01006755.1/588-667 7240:Drosophila simulans
Length = 80
Score = 91.7 bits (46), Expect = 1e-18
Identities = 55/57 (96%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 1 cacttatataattttgattgttgctcagaaagcccttattg--taccagttggcttt 55
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 cacttatataattttgattgttgctcagaaagcccttattgtttaccagttggcttt 57
>RF00717;mir-315;AAFS01000172.1/91075-90992 46245:Drosophila
pseudoobscura pseudoobscura
Length = 84
Score = 75.8 bits (38), Expect = 8e-14
Identities = 59/65 (90%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 1 cacttatataattttgattgttgctcagaaagcccttat--tgtaccagttggctttcga 58
||||||| || |||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 1 cacttatctatttttgattgttgctcagaaagcccttataattaaccagttggctttcga 60
Query: 59 gcaat 63
|||||
Sbjct: 61 gcaat 65
>RF00717;mir-315;AAPU01011669.1/1431-1347 7230:Drosophila
mojavensis
Length = 85
Score = 65.9 bits (33), Expect = 7e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 3 cttatataattttgattgttgctcagaaagccc 35
|||||||||||||||||||||||||||||||||
Sbjct: 3 cttatataattttgattgttgctcagaaagccc 35
>RF00717;mir-315;AAPT01020729.1/201657-201576 7222:Drosophila
grimshawi
Length = 82
Score = 61.9 bits (31), Expect = 1e-09
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 6 atataattttgattgttgctcagaaagcccttattgtaccagttggctttcgagcaataa 65
||||||||||||||||||||||||||||| || | || |||||||||||| |||||
Sbjct: 6 atataattttgattgttgctcagaaagcctttcacttgacacttggctttcgagtaataa 65
Query: 66 ttgaaaccagataag 80
| ||||||| |||||
Sbjct: 66 tcgaaaccaaataag 80
>RF00717;mir-315;AANI01017430.1/85121-85040 7244:Drosophila
virilis
Length = 82
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 tatataattttgattgttgctcagaaagccct 36
||||| ||||||||||||||||||||||||||
Sbjct: 5 tatatcattttgattgttgctcagaaagccct 36
>RF00717;mir-315;AAGE02021501.1/12488-12571 7159:Aedes aegypti
(yellow fever mosquito)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 tatataattttgattgttgctcagaaagcc 34
|||| |||||||||||||||||||||||||
Sbjct: 5 tataaaattttgattgttgctcagaaagcc 34
>RF00717;mir-315;AAAB01006400.1/15231-15314 180454:Anopheles
gambiae str. PEST
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 tatataattttgattgttgctcagaaagcc 34
|||| |||||||||||||||||||||||||
Sbjct: 5 tataaaattttgattgttgctcagaaagcc 34
>RF00717;mir-315;ABLF01028780.1/3045-2960 7029:Acyrthosiphon pisum
(pea aphid)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 attttgattgttgctcagaaagcc 34
||||||||||||||||||||||||
Sbjct: 11 attttgattgttgctcagaaagcc 34
>RF00717;mir-315;AAZX01000470.1/15987-15906 7425:Nasonia
vitripennis (jewel wasp)
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34
>RF00717;mir-315;AADG05000960.1/7218-7138 7460:Apis mellifera
(honey bee)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34
>RF00717;mir-315;AAJJ01004236.1/2476-2553 7070:Tribolium castaneum
(red flour beetle)
Length = 78
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ttttgattgttgctcagaaagcc 34
|||||||||||||||||||||||
Sbjct: 11 ttttgattgttgctcagaaagcc 33
