miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;AAPT01020974.1/21428-21504 7222:Drosophila
          grimshawi
          Length = 77

 Score =  113 bits (57), Expect = 4e-25
 Identities = 73/77 (94%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                      
Query: 7  ttgagagttccatgcttccttgcattcaatagt-tatactcaagcatatggaatgtaaag 65
          ||||||||||||||||||||||||||||||||| ||||   |||||||||||||||||||
Sbjct: 1  ttgagagttccatgcttccttgcattcaatagtatataaataagcatatggaatgtaaag 60

                           
Query: 66 aagtatggagcgaaatc 82
          |||||||||||||||||
Sbjct: 61 aagtatggagcgaaatc 77




>RF00103;mir-1;AAPU01010689.1/17805-17881 7230:Drosophila
          mojavensis
          Length = 77

 Score =  105 bits (53), Expect = 9e-23
 Identities = 72/77 (93%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                      
Query: 7  ttgagagttccatgcttccttgcattcaatagt-tatactcaagcatatggaatgtaaag 65
          ||||||||||||||||||||||||||||||||| | ||   |||||||||||||||||||
Sbjct: 1  ttgagagttccatgcttccttgcattcaatagtatttatataagcatatggaatgtaaag 60

                           
Query: 66 aagtatggagcgaaatc 82
          |||||||||||||||||
Sbjct: 61 aagtatggagcgaaatc 77




>RF00103;mir-1;AAGE02025061.1/66260-66336 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 77

 Score = 93.7 bits (47), Expect = 4e-19
 Identities = 63/67 (94%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                      
Query: 12 agttccatgcttccttgcattcaatagttatactcaa-gcatatggaatgtaaagaagta 70
          |||||||||||||||||||||||||||| || || || ||||||||||||||||||||||
Sbjct: 6  agttccatgcttccttgcattcaatagtgattctgaaagcatatggaatgtaaagaagta 65

                 
Query: 71 tggagcg 77
          |||||||
Sbjct: 66 tggagcg 72




>RF00103;mir-1;ABKP02019312.1/70476-70554 377271:Anopheles gambiae
          M
          Length = 79

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 12 agttccatgcttccttgcattcaatagt 39
          ||||||||||||||||||||||||||||
Sbjct: 6  agttccatgcttccttgcattcaatagt 33




>RF00103;mir-1;ABKQ02015823.1/27063-26985 377270:Anopheles gambiae
          S
          Length = 79

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 12 agttccatgcttccttgcattcaatagt 39
          ||||||||||||||||||||||||||||
Sbjct: 6  agttccatgcttccttgcattcaatagt 33




>RF00103;mir-1;AAJJ01000046.1/50771-50844 7070:Tribolium castaneum
          (red flour beetle)
          Length = 74

 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 52 tatggaatgtaaagaagtatggagcgaa 79
          ||||||||||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatggagcgaa 71




>RF00103;mir-1;BAAB01105211.1/2094-2168 7091:Bombyx mori (domestic
          silkworm)
          Length = 75

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 50 catatggaatgtaaagaagtatggagc 76
          |||||||||||||||||||||||||||
Sbjct: 43 catatggaatgtaaagaagtatggagc 69




>RF00103;mir-1;ABLF01045264.1/8417-8511 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 95

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 52 tatggaatgtaaagaagtatggagcg 77
          ||||||||||||||||||||||||||
Sbjct: 68 tatggaatgtaaagaagtatggagcg 93




>RF00103;mir-1;AAZO01007144.1/49277-49350 121224:Pediculus humanus
          corporis (human body louse)
          Length = 74

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 52 tatggaatgtaaagaagtatggagc 76
          |||||||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatggagc 68




>RF00103;mir-1;AAZX01000650.1/30055-30128 7425:Nasonia vitripennis
          (jewel wasp)
          Length = 74

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 52 tatggaatgtaaagaagtatggagc 76
          |||||||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatggagc 68




>RF00103;mir-1;AADG05005577.1/859-932 7460:Apis mellifera (honey
          bee)
          Length = 74

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 52 tatggaatgtaaagaagtatggagc 76
          |||||||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatggagc 68




>RF00103;mir-1;ABJB010316955.1/9942-10021 6945:Ixodes scapularis
          (black-legged tick)
          Length = 80

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 52 tatggaatgtaaagaagtatggag 75
          ||||||||||||||||||||||||
Sbjct: 50 tatggaatgtaaagaagtatggag 73




>RF00103;mir-1;ABIR01002879.1/50521-50595 6334:Trichinella
          spiralis
          Length = 75

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 51 atatggaatgtaaagaagtatg 72
          ||||||||||||||||||||||
Sbjct: 44 atatggaatgtaaagaagtatg 65




>RF00103;mir-1;ABLE02030552.1/3109-3195 281687:Caenorhabditis
          japonica
          Length = 87

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 51 atatggaatgtaaagaagtatg 72
          ||||||||||||||||||||||
Sbjct: 56 atatggaatgtaaagaagtatg 77




>RF00103;mir-1;AAGD02012398.1/27745-27823 31234:Caenorhabditis
          remanei
          Length = 79

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 51 atatggaatgtaaagaagtatg 72
          ||||||||||||||||||||||
Sbjct: 48 atatggaatgtaaagaagtatg 69




>RF00103;mir-1;CAAC02000511.1/295307-295229 6238:Caenorhabditis
          briggsae
          Length = 79

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 51 atatggaatgtaaagaagtatg 72
          ||||||||||||||||||||||
Sbjct: 48 atatggaatgtaaagaagtatg 69