miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00047;mir-2;AANI01013749.1/162474-162400 7244:Drosophila
          virilis
          Length = 75

 Score =  139 bits (70), Expect = 6e-33
 Identities = 73/74 (98%)
 Strand = Plus / Plus

                                                                      
Query: 6  tcattcttcaaagtggttgtgaaatgtttgcctttttatgcctattcatatcacagccag 65
          |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1  tcattcttcaaagtggttgtgaaatgtttgcctttttatgcctactcatatcacagccag 60

                        
Query: 66 ctttgaggagcgac 79
          ||||||||||||||
Sbjct: 61 ctttgaggagcgac 74




>RF00047;mir-2;FJ485602.1/38-106 7227:Drosophila melanogaster
          (fruit fly)
          Length = 69

 Score = 60.0 bits (30), Expect = 5e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 48 tattcatatcacagccagctttgaggagcg 77
          ||||||||||||||||||||||||||||||
Sbjct: 37 tattcatatcacagccagctttgaggagcg 66




>RF00047;mir-2;AAZO01007079.1/41194-41254 121224:Pediculus humanus
          corporis (human body louse)
          Length = 61

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 49 attcatatcacagccagctttgaggagcg 77
          ||||||||||||||||||||||| |||||
Sbjct: 30 attcatatcacagccagctttgatgagcg 58




>RF00047;mir-2;AAIZ01000971.1/3321-3388 7234:Drosophila persimilis
          Length = 68

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 48 tattcatatcacagccagctttgag 72
          |||||||||||||||||||||||||
Sbjct: 37 tattcatatcacagccagctttgag 61




>RF00047;mir-2;AADG05000005.1/25868-25935 7460:Apis mellifera
          (honey bee)
          Length = 68

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 50 ttcatatcacagccagctttgaggagcg 77
          |||||||||||||||||||||| |||||
Sbjct: 38 ttcatatcacagccagctttgatgagcg 65




>RF00047;mir-2;AAGE02012793.1/17551-17479 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 73

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 51 tcatatcacagccagctttgaggagcga 78
          ||||||||||||||||||||| ||||||
Sbjct: 44 tcatatcacagccagctttgaagagcga 71




>RF00047;mir-2;ABJB010692301.1/11251-11184 6945:Ixodes scapularis
          (black-legged tick)
          Length = 68

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 50 ttcatatcacagccagctttgaggagcg 77
          |||||||||||||||||||||| |||||
Sbjct: 38 ttcatatcacagccagctttgatgagcg 65




>RF00047;mir-2;AAQA01003088.1/958-1028 6279:Brugia malayi
          Length = 71

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 49 attcatatcacagccagctttga 71
          |||||||||||||||||||||||
Sbjct: 40 attcatatcacagccagctttga 62




>RF00047;mir-2;ABLF01009126.1/4189-4122 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 68

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 51 tcatatcacagccagctttgaggagcg 77
          ||||||||||||||||||||| |||||
Sbjct: 39 tcatatcacagccagctttgatgagcg 65




>RF00047;mir-2;BABH01007323.1/5785-5717 7091:Bombyx mori (domestic
          silkworm)
          Length = 69

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 catatcacagccagctttgaggagcga 78
          |||||||||||||||||||| ||||||
Sbjct: 41 catatcacagccagctttgatgagcga 67




>RF00047;mir-2;AAWU01020422.1/10643-10573 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 71

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 52 catatcacagccagctttgaggagcga 78
          |||||||||||||||||||| ||||||
Sbjct: 43 catatcacagccagctttgaagagcga 69




>RF00047;mir-2;AAJJ01001714.1/2663-2727 7070:Tribolium castaneum
          (red flour beetle)
          Length = 65

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 51 tcatatcacagccagctttgaggagcg 77
          ||||||||||||||||||||| |||||
Sbjct: 36 tcatatcacagccagctttgatgagcg 62




>RF00047;mir-2;AAJJ01001714.1/2814-2878 7070:Tribolium castaneum
          (red flour beetle)
          Length = 65

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 51 tcatatcacagccagctttgaggagcg 77
          ||||||||||||||||||||| |||||
Sbjct: 36 tcatatcacagccagctttgatgagcg 62




>RF00047;mir-2;CAAC02000589.1/1009397-1009308 6238:Caenorhabditis
          briggsae
          Length = 90

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 50 ttcatatcacagccagctttga 71
          ||||||||||||||||||||||
Sbjct: 60 ttcatatcacagccagctttga 81




>RF00047;mir-2;Z83731.1/29638-29566 6239:Caenorhabditis elegans
          Length = 73

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 50 ttcatatcacagccagctttga 71
          ||||||||||||||||||||||
Sbjct: 43 ttcatatcacagccagctttga 64




>RF00047;mir-2;AASC02030054.1/10531-10596 6500:Aplysia californica
          (California sea hare)
          Length = 66

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 51 tcatatcacagccagctttgaggagc 76
          ||||||||||||||||||||| ||||
Sbjct: 37 tcatatcacagccagctttgatgagc 62




>RF00047;mir-2;AAGE02012793.1/16205-16139 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 67

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 51 tcatatcacagccagctttgaggagc 76
          ||||||||||||||||||||| ||||
Sbjct: 38 tcatatcacagccagctttgatgagc 63




>RF00047;mir-2;AAAB01008807.1/11607145-11607220 180454:Anopheles
          gambiae str. PEST
          Length = 76

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 51 tcatatcacagccagctttgaggagc 76
          ||||||||||||||||||||| ||||
Sbjct: 47 tcatatcacagccagctttgatgagc 72




>RF00047;mir-2;AAAB01008807.1/11606832-11606920 180454:Anopheles
          gambiae str. PEST
          Length = 89

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 52 catatcacagccagctttgaggagcg 77
          |||||||||||||||||||| |||||
Sbjct: 61 catatcacagccagctttgaagagcg 86




>RF00047;mir-2;ABKP02009549.1/3713-3802 377271:Anopheles gambiae M
          Length = 90

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 52 catatcacagccagctttgaggagcg 77
          |||||||||||||||||||| |||||
Sbjct: 62 catatcacagccagctttgaagagcg 87