miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 335 bits (169), Expect = 1e-91
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 1 ttttgatttggagacagggatgaggcagagcatgggatggggctatcaacaaagtggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 ttttgatttggagacagggatgaggcagagcatgggatggggctatcaacaaagtggagg 66
Query: 61 gactagcttgtgaggcagaaagaaggtgccagtggttccctggcgaaacgatgatggcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gactagcttgtgaggcagaaagaaggtgccagtggttccctggcgaaacgatgatggcag 126
Query: 121 tgttgttgctccctcccctgcactgcctcttccctggctccgatccccc 169
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tgttgttgctccctcccctgcactgcctcttccctggctccgatccccc 175
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 186 bits (94), Expect = 7e-47
Identities = 156/178 (87%), Gaps = 9/178 (5%)
Strand = Plus / Plus
Query: 1 ttttgatttggagacagggatgaggcagagcatgggatggggctatcaacaaagtggagg 60
||||| |||||||||||||||||| ||||| |||||||||||| ||||||||| ||||||
Sbjct: 7 ttttggtttggagacagggatgagacagagaatgggatggggccatcaacaaaatggagg 66
Query: 61 gactagcttgtgaggcagaaagaag---------gtgccagtggttccctggcgaaacga 111
||||||||||||||||| |||| | ||||| ||| ||||||| |||||||
Sbjct: 67 gactagcttgtgaggcaaaaaggtgctactgccggtgccggtgcctccctggtgaaacga 126
Query: 112 tgatggcagtgttgttgctccctcccctgcactgcctcttccctggctccgatccccc 169
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 agatggcagtgttgttgctccctcccctgcactgcctcttccctggctccgatccccc 184
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 83.8 bits (42), Expect = 7e-16
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 10 ggagacagggatgaggcagagcatgggatggggctatcaaca 51
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 ggagacagggatgaggcagagcatgggatggggctatcaaca 56
Score = 81.8 bits (41), Expect = 3e-15
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 121 tgttgttgctccctcccctgcactgcctcttccctggctcc 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tgttgttgctccctcccctgcactgcctcttccctggctcc 165
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 79.8 bits (40), Expect = 1e-14
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 122 gttgttgctccctcccctgcactgcctcttccctggctcc 161
||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gttgttgctccctcccctgcactgcctcttccctggctcc 165
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 ggagacagggatgaggcagagcatggg 36
||||||||||| |||||||||||||||
Sbjct: 15 ggagacagggacgaggcagagcatggg 41
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 135 cccctgcactgcctcttccctggctc 160
||||||||||||||||||||||||||
Sbjct: 82 cccctgcactgcctcttccctggctc 107
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 135 cccctgcactgcctcttccctggct 159
|||||||||||||||||||||||||
Sbjct: 78 cccctgcactgcctcttccctggct 102
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggctcc 161
|||||||||||||||||||||||
Sbjct: 88 tgcactgcctcttccctggctcc 110
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 46.1 bits (23), Expect = 2e-04
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 15 cagggatgaggcagagcatgggatggggctatcaacaaa 53
|||||| |||||||||||| |||||| ||||||||||||
Sbjct: 21 cagggaagaggcagagcat-ggatggagctatcaacaaa 58
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggctc 160
||||||||||||||||||||||
Sbjct: 119 tgcactgcctcttccctggctc 140
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggctc 160
||||||||||||||||||||||
Sbjct: 88 tgcactgcctcttccctggctc 109
