miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 359 bits (181), Expect = 1e-98
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 34 ggttgggtttgatcggagacagggacgaggcagagcatgggtagggggccatcaacagaa 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggttgggtttgatcggagacagggacgaggcagagcatgggtagggggccatcaacagaa 60
Query: 94 ttccaaatttgatttctgtttgctcgctcacaaaatggagggactcaccacaaacacact 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttccaaatttgatttctgtttgctcgctcacaaaatggagggactcaccacaaacacact 120
Query: 154 caggcgttgttgctccctcccctgcactgcctcttccctggctcctcaccgtctcccatc 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caggcgttgttgctccctcccctgcactgcctcttccctggctcctcaccgtctcccatc 180
Query: 214 c 214
|
Sbjct: 181 c 181
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 79.8 bits (40), Expect = 2e-14
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 159 gttgttgctccctcccctgcactgcctcttccctggctcc 198
||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gttgttgctccctcccctgcactgcctcttccctggctcc 176
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 79.8 bits (40), Expect = 2e-14
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 159 gttgttgctccctcccctgcactgcctcttccctggctcc 198
||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gttgttgctccctcccctgcactgcctcttccctggctcc 167
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 ggagacagggacgaggcagagcatggg 74
||||||||||| |||||||||||||||
Sbjct: 16 ggagacagggatgaggcagagcatggg 42
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 79.8 bits (40), Expect = 2e-14
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 159 gttgttgctccctcccctgcactgcctcttccctggctcc 198
||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gttgttgctccctcccctgcactgcctcttccctggctcc 165
Score = 50.1 bits (25), Expect = 1e-05
Identities = 41/45 (91%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 48 ggagacagggacgaggcagagcatgggtagggggccatcaacaga 92
||||||||||| ||||||||||||||| | ||||| |||||||||
Sbjct: 15 ggagacagggatgaggcagagcatggg-atggggctatcaacaga 58
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 172 cccctgcactgcctcttccctggctc 197
||||||||||||||||||||||||||
Sbjct: 82 cccctgcactgcctcttccctggctc 107
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 172 cccctgcactgcctcttccctggct 196
|||||||||||||||||||||||||
Sbjct: 78 cccctgcactgcctcttccctggct 102
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 176 tgcactgcctcttccctggctcc 198
|||||||||||||||||||||||
Sbjct: 88 tgcactgcctcttccctggctcc 110
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 176 tgcactgcctcttccctggctc 197
||||||||||||||||||||||
Sbjct: 119 tgcactgcctcttccctggctc 140
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 176 tgcactgcctcttccctggctc 197
||||||||||||||||||||||
Sbjct: 88 tgcactgcctcttccctggctc 109
