miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 287 bits (145), Expect = 2e-77
Identities = 157/161 (97%)
Strand = Plus / Plus
Query: 1 ttttaatttggagacagggatgagacagagcatgggatggggctatcaacaaagtggagg 60
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 7 ttttgatttggagacagggatgaggcagagcatgggatggggctatcaacaaagtggagg 66
Query: 61 gactagcttgtgaggcagaaagaaggtgccagtggctccctggagaaacgatgatggcag 120
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 67 gactagcttgtgaggcagaaagaaggtgccagtggttccctggcgaaacgatgatggcag 126
Query: 121 tgttgttgctccctcccctgcactgcctcttccctggctcc 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tgttgttgctccctcccctgcactgcctcttccctggctcc 167
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 182 bits (92), Expect = 1e-45
Identities = 145/164 (88%), Gaps = 9/164 (5%)
Strand = Plus / Plus
Query: 7 tttggagacagggatgagacagagcatgggatggggctatcaacaaagtggagggactag 66
|||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||
Sbjct: 13 tttggagacagggatgagacagagaatgggatggggccatcaacaaaatggagggactag 72
Query: 67 cttgtgaggcagaaagaag---------gtgccagtggctccctggagaaacgatgatgg 117
||||||||||| |||| | ||||| ||| |||||||| ||||||| |||||
Sbjct: 73 cttgtgaggcaaaaaggtgctactgccggtgccggtgcctccctggtgaaacgaagatgg 132
Query: 118 cagtgttgttgctccctcccctgcactgcctcttccctggctcc 161
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 cagtgttgttgctccctcccctgcactgcctcttccctggctcc 176
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 83.8 bits (42), Expect = 7e-16
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 122 gttgttgctccctcccctgcactgcctcttccctggctcctc 163
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gttgttgctccctcccctgcactgcctcttccctggctcctc 167
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 81.8 bits (41), Expect = 3e-15
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 121 tgttgttgctccctcccctgcactgcctcttccctggctcc 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tgttgttgctccctcccctgcactgcctcttccctggctcc 165
Score = 75.8 bits (38), Expect = 2e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 10 ggagacagggatgagacagagcatgggatggggctatcaaca 51
||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 15 ggagacagggatgaggcagagcatgggatggggctatcaaca 56
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 135 cccctgcactgcctcttccctggctc 160
||||||||||||||||||||||||||
Sbjct: 82 cccctgcactgcctcttccctggctc 107
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 135 cccctgcactgcctcttccctggct 159
|||||||||||||||||||||||||
Sbjct: 78 cccctgcactgcctcttccctggct 102
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggctcc 161
|||||||||||||||||||||||
Sbjct: 88 tgcactgcctcttccctggctcc 110
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggctc 160
||||||||||||||||||||||
Sbjct: 119 tgcactgcctcttccctggctc 140
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggctc 160
||||||||||||||||||||||
Sbjct: 88 tgcactgcctcttccctggctc 109
