miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00788;mir-287;AAGH01003987.1/3230-3289 7240:Drosophila simulans
Length = 60
Score = 119 bits (60), Expect = 5e-27
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 7 gtcggaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgac 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 gtcggaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgac 1
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 21 acacatttacaataattgtaaatgtgt 47
||||||||||||| |||||||||||||
Sbjct: 20 acacatttacaattattgtaaatgtgt 46
>RF00788;mir-287;AAPP01015675.1/1283611-1283521 7217:Drosophila
ananassae
Length = 91
Score = 117 bits (59), Expect = 2e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 5 gggtcggaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacg 64
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 gggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcaca 84
Query: 65 actgtga 71
|||||||
Sbjct: 85 actgtga 91
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 21 acacatttacaataattgtaaatgtgt 47
||||||||||||| |||||||||||||
Sbjct: 67 acacatttacaattattgtaaatgtgt 41
>RF00788;mir-287;AAPQ01007040.1/1493379-1493287 7220:Drosophila
erecta
Length = 93
Score = 115 bits (58), Expect = 7e-26
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactg 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 21 acacatttacaataattgtaaatgtgt 47
||||||||||||| |||||||||||||
Sbjct: 69 acacatttacaattattgtaaatgtgt 43
>RF00788;mir-287;AAPU01010664.1/17553-17645 7230:Drosophila
mojavensis
Length = 93
Score = 113 bits (57), Expect = 3e-25
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactgtg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 33 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactgtg 92
Query: 71 a 71
|
Sbjct: 93 a 93
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 21 acacatttacaataattgtaaatgtgt 47
||||||||||||| |||||||||||||
Sbjct: 69 acacatttacaattattgtaaatgtgt 43
>RF00788;mir-287;AAFS01000718.1/2117-2027 46245:Drosophila
pseudoobscura pseudoobscura
Length = 91
Score = 111 bits (56), Expect = 1e-24
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 12 aaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactgtga 71
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 32 aaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactgtga 91
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 21 acacatttacaataattgtaaatgtgt 47
||||||||||||| |||||||||||||
Sbjct: 67 acacatttacaattattgtaaatgtgt 41
>RF00788;mir-287;AAEU02000290.1/178244-178333 7245:Drosophila
yakuba
Length = 90
Score = 109 bits (55), Expect = 5e-24
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 5 gggtcggaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacg 64
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 24 gggtctgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgcatg 83
Query: 65 actgtga 71
|||||||
Sbjct: 84 actgtga 90
>RF00788;mir-287;AAQB01006734.1/267050-266959 7260:Drosophila
willistoni
Length = 92
Score = 97.6 bits (49), Expect = 2e-20
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 11 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 63
||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 31 gaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcac 83
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 21 acacatttacaataattgtaaatgtgt 47
|||||||||||||||||||||||||||
Sbjct: 67 acacatttacaataattgtaaatgtgt 41
