miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00818;mir-318;AAGH01004927.1/3240-3173 7240:Drosophila simulans
Length = 68
Score = 135 bits (68), Expect = 7e-32
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcacactttaagcatcactgggctttgtttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacactttaagcatcactgggctttgtttat 60
Query: 61 ctcatgag 68
||||||||
Sbjct: 61 ctcatgag 68
>RF00818;mir-318;AAPU01010980.1/46750-46818 7230:Drosophila
mojavensis
Length = 69
Score = 67.9 bits (34), Expect = 1e-11
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcacacttt-aagcatcactgggctttgttta 59
|||||||||||||| ||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 1 tttatgggatacactaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
Query: 60 tctcat 65
||||||
Sbjct: 61 tctcat 66
>RF00818;mir-318;AAQB01008948.1/667-736 7260:Drosophila willistoni
Length = 70
Score = 63.9 bits (32), Expect = 2e-10
Identities = 59/67 (88%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcacacttta--agcatcactgggctttgttt 58
|||||||||||||| |||||||||||||| || | | ||||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcgcattccacgagcatcactgggctttgttt 60
Query: 59 atctcat 65
|||||||
Sbjct: 61 atctcat 67
>RF00818;mir-318;AAPP01019505.1/87887-87819 7217:Drosophila
ananassae
Length = 69
Score = 60.0 bits (30), Expect = 4e-09
Identities = 55/62 (88%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 5 tgggatacacacagttcagttttgtcacacttta-agcatcactgggctttgtttatctc 63
|||||||||||| |||||||| |||||| || |||||||||||||||||||||||||
Sbjct: 5 tgggatacacacggttcagttgtgtcacttttgcgagcatcactgggctttgtttatctc 64
Query: 64 at 65
||
Sbjct: 65 at 66
