miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01916;mir-988;AASS01029226.1/300-392 7240:Drosophila simulans
Length = 93
Score = 182 bits (92), Expect = 6e-46
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 5 gcggtaccgggcattttgggtgtgtgatttgtagcaaagtgatatgtatttgatcatccc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcggtaccgggcattttgggtgtgtgatttgtagcaaagtgatatgtatttgatcatccc 60
Query: 65 cttgttgcaaacctcacgccaaagatgatctg 96
||||||||||||||||||||||||||||||||
Sbjct: 61 cttgttgcaaacctcacgccaaagatgatctg 92
>RF01916;mir-988;AADE01001322.1/5472-5565 46245:Drosophila
pseudoobscura pseudoobscura
Length = 94
Score = 129 bits (65), Expect = 8e-30
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 16 cattttgggtgtgtgatttgtagcaaagtgatatgtatttgatcatccccttgttgcaaa 75
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 12 cattttgggtgtgtgatttgtggcaaagtgatatgcatttgatcatccccttgttgcaaa 71
Query: 76 cctcacgccaaag 88
|||||||||||||
Sbjct: 72 cctcacgccaaag 84
>RF01916;mir-988;AAPP01018719.1/1940-2034 7217:Drosophila
ananassae
Length = 95
Score = 121 bits (61), Expect = 2e-27
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 16 cattttgggtgtgtgatttgtagcaaagtgatatgtatttgatcatccccttgttgcaaa 75
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 12 cattttgggtgtgtgatttgtggcaaagtgataggtatttgatcatccccttgttgcaaa 71
Query: 76 cctcacgcc 84
|||||||||
Sbjct: 72 cctcacgcc 80
>RF01916;mir-988;AAQB01009924.1/1034111-1034206 7260:Drosophila
willistoni
Length = 96
Score = 111 bits (56), Expect = 2e-24
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 13 gggcattttgggtgtgtgatttgtagcaaagtgatatgtatttgatcatccccttgttgc 72
|||||||| ||| ||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 9 gggcatttcgggcgtgtgatttgtagcaaagtgatatgtacttgataatccccttgttgc 68
Query: 73 aaacctcacgcc 84
||||||||||||
Sbjct: 69 aaacctcacgcc 80
>RF01916;mir-988;AANI01014949.1/118376-118469 7244:Drosophila
virilis
Length = 94
Score = 65.9 bits (33), Expect = 1e-10
Identities = 67/76 (88%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 15 gcattttgggtgtgtgatttgtagcaaagtgatatgtatttgat--catccccttgttgc 72
|||||||||| ||||||||||| |||||||||| | || ||| ||||||||||||||
Sbjct: 11 gcattttgggcgtgtgatttgtggcaaagtgatgagc-ttggattccatccccttgttgc 69
Query: 73 aaacctcacgccaaag 88
||||||||||||||||
Sbjct: 70 aaacctcacgccaaag 85
>RF01916;mir-988;AAWU01031362.1/14271-14365 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 95
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 atcatccccttgttgcaaacctcacgc 83
|||||||||||||||||||||||||||
Sbjct: 55 atcatccccttgttgcaaacctcacgc 81
>RF01916;mir-988;AAGE02017684.1/78072-77982 7159:Aedes aegypti
(yellow fever mosquito)
Length = 91
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 atcatccccttgttgcaaacctcacgc 83
|||||||||||||||||||||||||||
Sbjct: 53 atcatccccttgttgcaaacctcacgc 79
>RF01916;mir-988;AAAB01008807.1/10005268-10005171 180454:Anopheles
gambiae str. PEST
Length = 98
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 tcatccccttgttgcaaacctcacgc 83
||||||||||||||||||||||||||
Sbjct: 58 tcatccccttgttgcaaacctcacgc 83
