miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01943;mir-999;AABU01002774.1/14048066-14047946 7227:Drosophila
melanogaster (fruit fly)
Length = 121
Score = 192 bits (97), Expect = 6e-49
Identities = 100/101 (99%)
Strand = Plus / Plus
Query: 1 ggatgccgctcaattaccccgacatagtcgtacggtgaatgttgtgtattggagaccaat 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 11 ggatgccgctcaattaccccgacatagtcatacggtgaatgttgtgtattggagaccaat 70
Query: 61 gttaactgtaagactgtgtctcggtggttgccagcccagcc 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 gttaactgtaagactgtgtctcggtggttgccagcccagcc 111
>RF01943;mir-999;AAPP01019541.1/123679-123560 7217:Drosophila
ananassae
Length = 120
Score = 172 bits (87), Expect = 5e-43
Identities = 93/95 (97%)
Strand = Plus / Plus
Query: 1 ggatgccgctcaattaccccgacatagtcgtacggtgaatgttgtgtattggagaccaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 11 ggatgccgctcaattaccccgacatagtcgtacggtgaatgttgtgtattggaaagcaat 70
Query: 61 gttaactgtaagactgtgtctcggtggttgccagc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 71 gttaactgtaagactgtgtctcggtggttgccagc 105
>RF01943;mir-999;AAFS01003957.1/6353-6235 46245:Drosophila
pseudoobscura pseudoobscura
Length = 119
Score = 135 bits (68), Expect = 1e-31
Identities = 86/91 (94%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 6 ccgctcaattaccccgacatagtcgtacggtgaatgttgtgtattggagaccaatgttaa 65
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 17 ccgctcaattaccatgacatagtcgtacggtgaatgttgtgtattg--gaccaatgttaa 74
Query: 66 ctgtaagactgtgtctcggtggttgccagcc 96
||||||||||||||||||||||||| |||||
Sbjct: 75 ctgtaagactgtgtctcggtggttgtcagcc 105
>RF01943;mir-999;AAQB01009428.1/36409-36290 7260:Drosophila
willistoni
Length = 120
Score = 133 bits (67), Expect = 5e-31
Identities = 86/91 (94%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 6 ccgctcaattaccccgacatagtcgtacggtgaatgttgtgtattggagaccaatgttaa 65
||||||||||||| ||||||||||||||||||||||||| ||| |||| ||||||||||
Sbjct: 16 ccgctcaattaccatgacatagtcgtacggtgaatgttgtttat-ggagtccaatgttaa 74
Query: 66 ctgtaagactgtgtctcggtggttgccagcc 96
|||||||||||||||||||||||||||||||
Sbjct: 75 ctgtaagactgtgtctcggtggttgccagcc 105
>RF01943;mir-999;AAPT01019304.1/332529-332410 7222:Drosophila
grimshawi
Length = 120
Score = 131 bits (66), Expect = 2e-30
Identities = 85/90 (94%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 7 cgctcaattaccccgacatagtcgtacggtgaatgttgtgtattggagaccaatgttaac 66
|||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 17 cgctcaattaccatgacatagtcgtacggtgaatgttgtgt-ttggagtccaatgttaac 75
Query: 67 tgtaagactgtgtctcggtggttgccagcc 96
||||||||||||||| ||||||||||||||
Sbjct: 76 tgtaagactgtgtcttggtggttgccagcc 105
>RF01943;mir-999;AAPU01011060.1/218967-218849 7230:Drosophila
mojavensis
Length = 119
Score = 125 bits (63), Expect = 1e-28
Identities = 82/87 (94%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 5 gccgctcaattaccccgacatagtcgtacggtgaatgttgtgtattggagaccaatgtta 64
|||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct: 15 gccgctcaattaccgtgacatagtcgtacggtgaatgttgtttat-ggagtccaatgtta 73
Query: 65 actgtaagactgtgtctcggtggttgc 91
|||||||||||||||||||||||||||
Sbjct: 74 actgtaagactgtgtctcggtggttgc 100
>RF01943;mir-999;AASS01029274.1/1756-1642 7240:Drosophila simulans
Length = 115
Score = 105 bits (53), Expect = 1e-22
Identities = 93/100 (93%), Gaps = 6/100 (6%)
Strand = Plus / Plus
Query: 2 gatgccgctcaattaccccgacatagtcgtacggtgaatgttgtgtattggagaccaatg 61
||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||||||
Sbjct: 12 gatgccgctcaata--cccgacatagtcgtacggtga-tgtt-tgtattg-agaccaatg 66
Query: 62 ttaactgtaagactgtgtctcggtggttgccagcccagcc 101
|||||||||||||||||||||||||| |||||||||||||
Sbjct: 67 ttaactgtaagactgtgtctcggtgg-tgccagcccagcc 105
>RF01943;mir-999;AAWU01001445.1/28151-28270 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 120
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 aatgttaactgtaagactgtgtct 81
||||||||||||||||||||||||
Sbjct: 69 aatgttaactgtaagactgtgtct 92
>RF01943;mir-999;AAGE02006027.1/163141-163260 7159:Aedes aegypti
(yellow fever mosquito)
Length = 120
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 aatgttaactgtaagactgtgtct 81
||||||||||||||||||||||||
Sbjct: 69 aatgttaactgtaagactgtgtct 92
>RF01943;mir-999;ABKQ02022076.1/15069-14951 377270:Anopheles
gambiae S
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 aatgttaactgtaagactgtgtct 81
||||||||||||||||||||||||
Sbjct: 69 aatgttaactgtaagactgtgtct 92
