miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00716;mir-3;AANI01014795.1/39022-39093 7244:Drosophila virilis
Length = 72
Score = 129 bits (65), Expect = 4e-30
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1 tgggatgcattttgtgcggttatgtctgcctccaaaacccatcactgggcaaagtgtgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tgggatgcattttgtgcggttatgtctgcctccaaaacccatcactgggcaaagtgtgtc 65
Query: 61 tcaaa 65
|||||
Sbjct: 66 tcaaa 70
>RF00716;mir-3;AAPU01010225.1/183837-183766 7230:Drosophila
mojavensis
Length = 72
Score = 61.9 bits (31), Expect = 8e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 35 aaacccatcactgggcaaagtgtgtctcaaa 65
|||||||||||||||||||||||||||||||
Sbjct: 40 aaacccatcactgggcaaagtgtgtctcaaa 70
>RF00716;mir-3;AAPT01006453.1/2658-2730 7222:Drosophila grimshawi
Length = 73
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 ccatcactgggcaaagtgtgtctcaaa 65
|||||||||||||||||||||||||||
Sbjct: 45 ccatcactgggcaaagtgtgtctcaaa 71
>RF00716;mir-3;AASW01005437.1/411-478 7240:Drosophila simulans
Length = 68
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 catcactgggcaaagtgtgtctcaa 64
|||||||||||||||||||||||||
Sbjct: 41 catcactgggcaaagtgtgtctcaa 65
>RF00716;mir-3;AAPP01018770.1/56641-56712 7217:Drosophila
ananassae
Length = 72
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 39 ccatcactgggcaaagtgtgtctca 63
|||||||||||||||||||||||||
Sbjct: 44 ccatcactgggcaaagtgtgtctca 68
>RF00716;mir-3;AADE01001895.1/2973-3045 46245:Drosophila
pseudoobscura pseudoobscura
Length = 73
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 catcactgggcaaagtgtgtctca 63
||||||||||||||||||||||||
Sbjct: 46 catcactgggcaaagtgtgtctca 69
>RF00716;mir-3;AAQB01006291.1/71735-71659 7260:Drosophila
willistoni
Length = 77
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 catcactgggcaaagtgtgtctca 63
||||||||||||||||||||||||
Sbjct: 50 catcactgggcaaagtgtgtctca 73
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tgggatgcattttgtgcggttatgtct 27
||||||||||||||||| |||||||||
Sbjct: 6 tgggatgcattttgtgcagttatgtct 32
