miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00047;mir-2;AANI01017189.1/98316-98382 7244:Drosophila virilis
Length = 67
Score = 133 bits (67), Expect = 3e-31
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 2 catgtcgttaaaatgcctgtgaccttatgtattttatatcatatcacagccattttgacg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catgtcgttaaaatgcctgtgaccttatgtattttatatcatatcacagccattttgacg 60
Query: 62 agtttgg 68
|||||||
Sbjct: 61 agtttgg 67
>RF00047;mir-2;AAIZ01000548.1/11193-11126 7234:Drosophila
persimilis
Length = 68
Score = 79.8 bits (40), Expect = 4e-15
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 2 catgtcgttaaaatgcctgtgaccttatgtatt-ttatatcatatcacagccattttgac 60
||||||||||||||| |||||||||||||| | || ||||||||||||||||||||||
Sbjct: 1 catgtcgttaaaatgtttgtgaccttatgtactcttgaatcatatcacagccattttgac 60
Query: 61 gagtttgg 68
||||||||
Sbjct: 61 gagtttgg 68
>RF00047;mir-2;AASW01010650.1/86-152 7240:Drosophila simulans
Length = 67
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 2 catgtcgttaaaatgcctgtgaccttatgtattttatatcatatcacagccattttgacg 61
||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||
Sbjct: 1 catgtcgttaaaatgtttgtgaacttatgtattcgcaatcatatcacagccattttgacg 60
Query: 62 agtttgg 68
|||||||
Sbjct: 61 agtttgg 67
>RF00047;mir-2;AAPP01016552.1/52617-52684 7217:Drosophila
ananassae
Length = 68
Score = 61.9 bits (31), Expect = 9e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 30 gtattttatatcatatcacagccattttgacgagtttgg 68
|||||| || |||||||||||||||||||||||||||||
Sbjct: 30 gtatttgatgtcatatcacagccattttgacgagtttgg 68
>RF00047;mir-2;AAPU01009688.1/35644-35576 7230:Drosophila
mojavensis
Length = 69
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 38 tatcatatcacagccattttgacgagtttg 67
||||||||||||||||||||||||||||||
Sbjct: 39 tatcatatcacagccattttgacgagtttg 68
>RF00047;mir-2;AAQB01008610.1/296699-296630 7260:Drosophila
willistoni
Length = 70
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttgg 68
|||||||||||||||||||||||||||||
Sbjct: 42 tcatatcacagccattttgacgagtttgg 70
>RF00047;mir-2;AAWU01020422.1/10782-10706 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 77
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttg 67
||||||||||||||||||||||||||||
Sbjct: 49 tcatatcacagccattttgacgagtttg 76
>RF00047;mir-2;AAAB01008807.1/11606679-11606749 180454:Anopheles
gambiae str. PEST
Length = 71
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttg 67
||||||||||||||||||||||||||||
Sbjct: 43 tcatatcacagccattttgacgagtttg 70
>RF00047;mir-2;AAIZ01004769.1/8926-8993 7234:Drosophila persimilis
Length = 68
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttg 67
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>RF00047;mir-2;AAKO01003387.1/9775-9842 7238:Drosophila sechellia
Length = 68
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttg 67
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>RF00047;mir-2;AANI01016575.1/52926-52998 7244:Drosophila virilis
Length = 73
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttg 67
||||||||||||||||||||||||||||
Sbjct: 45 tcatatcacagccattttgacgagtttg 72
>RF00047;mir-2;AAGE02012793.1/17697-17627 7159:Aedes aegypti
(yellow fever mosquito)
Length = 71
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtt 65
||||||||||||||||||||||||||
Sbjct: 43 tcatatcacagccattttgacgagtt 68
>RF00047;mir-2;AAQB01006881.1/26688-26760 7260:Drosophila
willistoni
Length = 73
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtt 65
||||||||||||||||||||||||||
Sbjct: 45 tcatatcacagccattttgacgagtt 70
>RF00047;mir-2;AAJJ01001714.1/2527-2594 7070:Tribolium castaneum
(red flour beetle)
Length = 68
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 43 tatcacagccattttgacgagtttgg 68
||||||||||||||||||||||||||
Sbjct: 43 tatcacagccattttgacgagtttgg 68
>RF00047;mir-2;AAIZ01000548.1/11342-11275 7234:Drosophila
persimilis
Length = 68
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 atcatatcacagccattttgacgagttt 66
||||||||||||||||||||| ||||||
Sbjct: 39 atcatatcacagccattttgatgagttt 66
>RF00047;mir-2;AE014297.2/11243334-11243266 7227:Drosophila
melanogaster (fruit fly)
Length = 69
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagttt 66
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgatgagttt 67
>RF00047;mir-2;AAPU01011022.1/363976-364043 7230:Drosophila
mojavensis
Length = 68
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagttt 66
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgatgagttt 66
>RF00047;mir-2;AADG05000005.1/25311-25372 7460:Apis mellifera
(honey bee)
Length = 62
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 40 tcatatcacagccattttgacgagtttgg 68
|||||||||||||||||||| ||| ||||
Sbjct: 34 tcatatcacagccattttgatgagcttgg 62
