miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00661;mir-31;AANI01013847.1/25203-25083 7244:Drosophila virilis
          Length = 121

 Score =  240 bits (121), Expect = 4e-63
 Identities = 121/121 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaataatgaatttggcaagatgtcggaatagctgagagcacaaagtcataaatccagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caaataatgaatttggcaagatgtcggaatagctgagagcacaaagtcataaatccagaa 60

                                                                       
Query: 61  tttctattttgtgtatttttattgagtacagcggctatgcctcatctagtcaattgcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tttctattttgtgtatttttattgagtacagcggctatgcctcatctagtcaattgcatt 120

            
Query: 121 c 121
           |
Sbjct: 121 c 121




>RF00661;mir-31;AAPU01009413.1/121752-121873 7230:Drosophila
           mojavensis
          Length = 122

 Score =  180 bits (91), Expect = 3e-45
 Identities = 118/123 (95%), Gaps = 3/123 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaataatgaatttggcaagatgtcggaatagctgagagcacaaa-gtcata-aatccag 58
           |||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||
Sbjct: 1   caaataatgaatttggcaagatgtcggaatagctgagagcacaaatatcatagaatccag 60

                                                                       
Query: 59  aatttctattttgtgtatttttattgagtacagcggctatgcctcatctagtcaattgca 118
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aatttatattttgtgta-ttttattgagtacagcggctatgcctcatctagtcaattgca 119

              
Query: 119 ttc 121
           |||
Sbjct: 120 ttc 122




>RF00661;mir-31;AAPT01021280.1/172982-172862 7222:Drosophila
           grimshawi
          Length = 121

 Score =  176 bits (89), Expect = 5e-44
 Identities = 113/121 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaataatgaatttggcaagatgtcggaatagctgagagcacaaagtcataaatccagaa 60
           |||||||||||||||||||||||||||||||||||| |||||||  ||| ||||| ||||
Sbjct: 1   caaataatgaatttggcaagatgtcggaatagctgacagcacaagatcacaaatcaagaa 60

                                                                       
Query: 61  tttctattttgtgtatttttattgagtacagcggctatgcctcatctagtcaattgcatt 120
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  actttattttgtgtatttttattgagtacagcggctatgcctcatctagtcaattgcatt 120

            
Query: 121 c 121
           |
Sbjct: 121 c 121




>RF00661;mir-31;AAPP01016551.1/245474-245363 7217:Drosophila
          ananassae
          Length = 112

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                     
Query: 1  caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
          |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  caaataatgaatttggcaagatgtcggaatagctgagagcaca 43



 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 90  agcggctatgcctcatctagtcaattgcatt 120
           |||||||||||||||||||||||||| ||||
Sbjct: 81  agcggctatgcctcatctagtcaattacatt 111




>RF00661;mir-31;AAPQ01005997.1/12172-12293 7220:Drosophila erecta
          Length = 122

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                     
Query: 1  caaataatgaatttggcaagatgtcggaatagctgagagcaca 43
          |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  caaataatgaatttggcaagatgtcggaatagctgagagcaca 43



 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 90  agcggctatgcctcatctagtcaattgcatt 120
           |||||||||||||||||||||||||||||||
Sbjct: 91  agcggctatgcctcatctagtcaattgcatt 121




>RF00661;mir-31;AAIZ01004624.1/839-930 7234:Drosophila persimilis
          Length = 92

 Score = 83.8 bits (42), Expect = 5e-16
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                        
Query: 1  caaataatgaatttggcaagatgtcggaatagctgagagcacaaag 46
          ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1  caaataatgaatttggcaagatgtcggaatagctgagagcaaaaag 46



 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 91  gcggctatgcctcatctagtcaattgcattc 121
           |||||||||||||||||||||||||||||||
Sbjct: 62  gcggctatgcctcatctagtcaattgcattc 92




>RF00661;mir-31;AAQB01010380.1/1470-1604 7260:Drosophila willistoni
          Length = 135

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 92  cggctatgcctcatctagtcaattgcatt 120
           |||||||||||||||||||||||||||||
Sbjct: 106 cggctatgcctcatctagtcaattgcatt 134



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 11 atttggcaagatgtcggaatagctga 36
          ||||||||||||||||||||||||||
Sbjct: 11 atttggcaagatgtcggaatagctga 36