miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AANI01017473.1/521223-521153 7244:Drosophila
virilis
Length = 71
Score = 141 bits (71), Expect = 2e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 12 cggaggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaatacaactgcag 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggaggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaatacaactgcag 60
Query: 72 tgcaagctccg 82
|||||||||||
Sbjct: 61 tgcaagctccg 71
>RF00667;mir-33;AAPU01011618.1/111826-111755 7230:Drosophila
mojavensis
Length = 72
Score = 71.9 bits (36), Expect = 1e-12
Identities = 64/72 (88%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 12 cggaggtgcattgtagtcgcattgtctgtctcaaat-ttgcccgcggcaatacaactgca 70
||||||||||||||||||||||||||||| || | || | |||||||||||||||||
Sbjct: 1 cggaggtgcattgtagtcgcattgtctgtatcctttattctctgcggcaatacaactgca 60
Query: 71 gtgcaagctccg 82
||||||||||||
Sbjct: 61 gtgcaagctccg 72
>RF00667;mir-33;AC154052.1/87680-87612 7227:Drosophila
melanogaster (fruit fly)
Length = 69
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgtctcaaatttgcccgcggcaatacaactgcagtgc 74
||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||
Sbjct: 4 aggtgcattgtagtcgcattgtctgtcccaa--ttgcttcaggcaatacaacttcagtgc 61
Query: 75 aagctc 80
||||||
Sbjct: 62 aagctc 67
>RF00667;mir-33;AAFS01000103.1/61981-62050 46245:Drosophila
pseudoobscura pseudoobscura
Length = 70
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgtc 41
|||||||||||||||||||||||||||
Sbjct: 4 aggtgcattgtagtcgcattgtctgtc 30
>RF00667;mir-33;AAQB01006223.1/189436-189525 7260:Drosophila
willistoni
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aggtgcattgtagtcgcattgtctgt 40
||||||||||||||||||||||||||
Sbjct: 4 aggtgcattgtagtcgcattgtctgt 29
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 ggcaatacaactgcagtgcaagct 79
||||||||||||||||||||||||
Sbjct: 64 ggcaatacaactgcagtgcaagct 87
