miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 454 bits (229), Expect = e-127
Identities = 229/229 (100%)
Strand = Plus / Plus
Query: 4 ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaagctcattccaat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaagctcattccaat 60
Query: 64 ctgattctctaaactttggaggtctcttacacctaggcctgaaagctcctctcccattag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgattctctaaactttggaggtctcttacacctaggcctgaaagctcctctcccattag 120
Query: 124 ttgcctacaacattggaaaagagtttctcacattatcttagaatccattgcaagatcata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttgcctacaacattggaaaagagtttctcacattatcttagaatccattgcaagatcata 180
Query: 184 cttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 232
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 139 bits (70), Expect = 2e-32
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 165 aatccattgcaagatcatacttgtggctttcttgcaagttgtgcagttgttgcctcaagc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 aatccattgcaagatcatacttgtggctttcttgcaagttgtgcagttgttgcctcaagc 149
Query: 225 ttgctgcctc 234
||||||||||
Sbjct: 150 ttgctgcctc 159
Score = 87.7 bits (44), Expect = 6e-17
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 1 ggtggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaag 52
||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 8 ggtggcaccaagcattagtcaggaactgcattacttgcaagaaagtcacaag 59
Score = 54.0 bits (27), Expect = 9e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 25 actgcattacttgcaagaaagtcacaa 51
|||||||||||||||||||||||||||
Sbjct: 63 actgcattacttgcaagaaagtcacaa 89
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 103 bits (52), Expect = 1e-21
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 1 ggtggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaag 52
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ggtggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaag 59
Score = 46.1 bits (23), Expect = 2e-04
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 182 tacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 232
|||||||| ||||||||||||| ||||||| ||||||| ||||| ||||
Sbjct: 61 tacttgtgactttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 11
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 93.7 bits (47), Expect = 1e-18
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 180 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 234
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 111 catacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctc 165
Score = 50.1 bits (25), Expect = 1e-05
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 4 ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaag 52
|||| ||||| |||||||| ||||||| ||||||||||||| ||||||
Sbjct: 163 ggcagcaagcttgaggcagcaactgcacgacttgcaagaaagccacaag 115
Score = 44.1 bits (22), Expect = 9e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 4 ggcaccaagcatgaggcaggaactgcattacttg 37
|||||||||||||||||| ||||||| ||||||
Sbjct: 11 ggcaccaagcatgaggcaacaactgcagtacttg 44
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 87.7 bits (44), Expect = 6e-17
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 191 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 234
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 157
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1 ggtggcaccaagcatgaggcaggaactgcattacttgcaag 41
||||||||||||||||||| ||||||||||||||||||
Sbjct: 8 ggtggcaccaagcatgaggttacaactgcattacttgcaag 48
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 77.8 bits (39), Expect = 6e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 192 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 234
||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctc 120
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 77.8 bits (39), Expect = 6e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 192 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 234
||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 80 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctc 122
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 192 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 232
||||||||||| | |||||||| |||||| |||||||||||
Sbjct: 51 tttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 69.9 bits (35), Expect = 2e-11
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 192 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 234
||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 78 tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctc 120
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 67.9 bits (34), Expect = 6e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 193 ttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 234
|||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctc 121
Score = 48.1 bits (24), Expect = 6e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 4 ggcaccaagcatgaggcaggaactgcattacttgcaagaa 43
|||| ||||| |||||||| |||||||| |||||||||||
Sbjct: 119 ggcagcaagcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 58.0 bits (29), Expect = 6e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 198 gcaagttgtgcagttgttgcctcaagcttgctgcctc 234
||||||| |||||||| ||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctc 126
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 58.0 bits (29), Expect = 6e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 194 tcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 234
||||||||||| |||||||| |||||||||||| |||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctc 121
