miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00732;mir-305;AANI01016257.1/59422-59335 7244:Drosophila
          virilis
          Length = 88

 Score =  145 bits (73), Expect = 8e-35
 Identities = 73/73 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtctattgtacttcatcaggtgctctggtgtgacttgtaacccggcacatgttgaag 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8  catgtctattgtacttcatcaggtgctctggtgtgacttgtaacccggcacatgttgaag 67

                       
Query: 61 tacactcaatatg 73
          |||||||||||||
Sbjct: 68 tacactcaatatg 80




>RF00732;mir-305;AAPP01015737.1/35950-36037 7217:Drosophila
          ananassae
          Length = 88

 Score =  105 bits (53), Expect = 7e-23
 Identities = 68/73 (93%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtctattgtacttcatcaggtgctctggtgtgacttgtaacccggcacatgttgaag 60
          ||||||||||||||||||||||||||||||||||     |||||||||||||||||||||
Sbjct: 8  catgtctattgtacttcatcaggtgctctggtgtccaccgtaacccggcacatgttgaag 67

                       
Query: 61 tacactcaatatg 73
          |||||||||||||
Sbjct: 68 tacactcaatatg 80




>RF00732;mir-305;AAAB01008980.1/2241127-2241216 180454:Anopheles
          gambiae str. PEST
          Length = 90

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 63/70 (90%), Gaps = 4/70 (5%)
 Strand = Plus / Plus

                                                                      
Query: 1  catgtctattgtacttcatcaggtgctctggtgtgacttg---taacccggcacatgttg 57
          ||||||||||||||||||||||||||||||||| || |||    ||||||||||||||||
Sbjct: 8  catgtctattgtacttcatcaggtgctctggtg-gatttgagaaaacccggcacatgttg 66

                    
Query: 58 aagtacactc 67
           |||||||||
Sbjct: 67 gagtacactc 76




>RF00732;mir-305;AAGE02001651.1/105678-105765 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 88

 Score = 63.9 bits (32), Expect = 2e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 1  catgtctattgtacttcatcaggtgctctggt 32
          ||||||||||||||||||||||||||||||||
Sbjct: 8  catgtctattgtacttcatcaggtgctctggt 39




>RF00732;mir-305;AAJJ01000649.1/41392-41476 7070:Tribolium
          castaneum (red flour beetle)
          Length = 85

 Score = 63.9 bits (32), Expect = 2e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 1  catgtctattgtacttcatcaggtgctctggt 32
          ||||||||||||||||||||||||||||||||
Sbjct: 8  catgtctattgtacttcatcaggtgctctggt 39




>RF00732;mir-305;BABH01005296.1/11892-11978 7091:Bombyx mori
          (domestic silkworm)
          Length = 87

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 8  attgtacttcatcaggtgctctggtg 33
          ||||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctggtg 40




>RF00732;mir-305;AADG05001619.1/14219-14305 7460:Apis mellifera
          (honey bee)
          Length = 87

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 8  attgtacttcatcaggtgctctggtg 33
          ||||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctggtg 40




>RF00732;mir-305;AAZO01007192.1/28953-29038 121224:Pediculus
          humanus corporis (human body louse)
          Length = 86

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 8  attgtacttcatcaggtgctctggt 32
          |||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctggt 39




>RF00732;mir-305;ABJB010539510.1/4555-4465 6945:Ixodes scapularis
          (black-legged tick)
          Length = 91

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 8  attgtacttcatcaggtgctctgg 31
          ||||||||||||||||||||||||
Sbjct: 15 attgtacttcatcaggtgctctgg 38