miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00716;mir-3;AANI01014795.1/38873-38947 7244:Drosophila virilis
Length = 75
Score = 147 bits (74), Expect = 2e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 attatatggtaaactttgttcagttttgccaggctctttttgtgcgcatcactgggtgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 attatatggtaaactttgttcagttttgccaggctctttttgtgcgcatcactgggtgaa 61
Query: 61 gtttgtcgtataat 74
||||||||||||||
Sbjct: 62 gtttgtcgtataat 75
>RF00716;mir-3;AAPU01010225.1/183969-183894 7230:Drosophila
mojavensis
Length = 76
Score = 101 bits (51), Expect = 1e-21
Identities = 70/75 (93%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 attatatggtaaactttgttcagttttgccaggctcttt-ttgtgcgcatcactgggtga 59
|||||| ||||||||||||||||||||||| || ||| | ||||||||||||||||||||
Sbjct: 2 attataaggtaaactttgttcagttttgccgggttctatgttgtgcgcatcactgggtga 61
Query: 60 agtttgtcgtataat 74
|||||||||||||||
Sbjct: 62 agtttgtcgtataat 76
>RF00716;mir-3;AAPT01020768.1/62694-62618 7222:Drosophila
grimshawi
Length = 77
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 catcactgggtgaagtttgtcgtataat 74
||||||||||||||||||||||||||||
Sbjct: 50 catcactgggtgaagtttgtcgtataat 77
>RF00716;mir-3;AAQB01006291.1/71887-71803 7260:Drosophila
willistoni
Length = 85
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 attatatggtaaactttgttcagttttgc 29
|||||||| ||||||||||||||||||||
Sbjct: 2 attatatgataaactttgttcagttttgc 30
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 gcatcactgggtgaagtttgtcgtataat 74
|||||||||||||||||||||| ||||||
Sbjct: 57 gcatcactgggtgaagtttgtcttataat 85
>RF00716;mir-3;AAFS01000371.1/25053-25121 46245:Drosophila
pseudoobscura pseudoobscura
Length = 69
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 attatatggtaaactttgttcagttttgcca 31
|||||| | ||||||||||||||||||||||
Sbjct: 2 attatacgataaactttgttcagttttgcca 32
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 50 cactgggtgaagtttgtcgtataat 74
|||||||||||||||||| ||||||
Sbjct: 45 cactgggtgaagtttgtcttataat 69
