miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00720;mir-317;AANI01014607.1/383695-383607 7244:Drosophila
virilis
Length = 89
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 tgcaattgccgctgggatacaccctgtgctcgctttgaattgtgcaagcaagtgaacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgcaattgccgctgggatacaccctgtgctcgctttgaattgtgcaagcaagtgaacaca 61
Query: 61 gctggtggtatccagtggccgttggc 86
||||||||||||||||||||||||||
Sbjct: 62 gctggtggtatccagtggccgttggc 87
>RF00720;mir-317;AAIZ01005964.1/1594-1504 7234:Drosophila
persimilis
Length = 91
Score = 115 bits (58), Expect = 9e-26
Identities = 79/85 (92%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 tgcaattgccgctgggatacaccctgtgctcgctttgaatt--gtgcaagcaagtgaaca 58
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 61
Query: 59 cagctggtggtatccagtggccgtt 83
|||||||||||||||| ||||||||
Sbjct: 62 cagctggtggtatccaatggccgtt 86
>RF00720;mir-317;AAEU02000013.1/76417-76507 7245:Drosophila yakuba
Length = 91
Score = 107 bits (54), Expect = 2e-23
Identities = 69/73 (94%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 13 tgggatacaccctgtgctcgctttgaattg--tgcaagcaagtgaacacagctggtggta 70
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
Query: 71 tccagtggccgtt 83
|||||||||||||
Sbjct: 74 tccagtggccgtt 86
>RF00720;mir-317;AAPU01011031.1/18314-18226 7230:Drosophila
mojavensis
Length = 89
Score = 103 bits (52), Expect = 4e-22
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 1 tgcaattgccgctgggatacaccctgtgctcgctttgaattgtgcaagcaagtgaacaca 60
|||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 2 tgcaattgccgctgggatacaccctgtgctcgctttgagtttatgttgcaagtgaacaca 61
Query: 61 gctggtggtatccagtggccgttg 84
||||||||||||||| ||||||||
Sbjct: 62 gctggtggtatccagaggccgttg 85
>RF00720;mir-317;AAPT01018372.1/102669-102760 7222:Drosophila
grimshawi
Length = 92
Score = 101 bits (51), Expect = 1e-21
Identities = 79/86 (91%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 1 tgcaattgccgctgggataca-ccctgtgctcgctttgaat--tgtgcaagcaagtgaac 57
|||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||||
Sbjct: 2 tgcaattgccactgggatattgccctgtgctcgctttgaatattgtgtaagcaagtgaac 61
Query: 58 acagctggtggtatccagtggccgtt 83
||||||||||||||||||||||||||
Sbjct: 62 acagctggtggtatccagtggccgtt 87
>RF00720;mir-317;AAGE02012640.1/88438-88525 7159:Aedes aegypti
(yellow fever mosquito)
Length = 88
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 14 gggatacaccctgtgctcgctttgaattgtgcaagcaagtgaacacagctggtggtatc- 72
|||||||||||||||||||||||| || | || | ||||||||||||||||||||||
Sbjct: 15 gggatacaccctgtgctcgctttgcat--tcgaaactagtgaacacagctggtggtatct 72
Query: 73 cagtggcc 80
||||||||
Sbjct: 73 cagtggcc 80
>RF00720;mir-317;AAZO01004205.1/873-973 121224:Pediculus humanus
corporis (human body louse)
Length = 101
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 aagtgaacacagctggtggtatc 72
|||||||||||||||||||||||
Sbjct: 62 aagtgaacacagctggtggtatc 84
>RF00720;mir-317;ABLF01040770.1/5816-5924 7029:Acyrthosiphon pisum
(pea aphid)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 agtgaacacagctggtggtatc 72
||||||||||||||||||||||
Sbjct: 71 agtgaacacagctggtggtatc 92
>RF00720;mir-317;AADK01000441.1/12625-12537 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 agtgaacacagctggtggtatc 72
||||||||||||||||||||||
Sbjct: 51 agtgaacacagctggtggtatc 72
>RF00720;mir-317;AAJJ01000475.1/38254-38168 7070:Tribolium
castaneum (red flour beetle)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 agtgaacacagctggtggtatc 72
||||||||||||||||||||||
Sbjct: 49 agtgaacacagctggtggtatc 70
