miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AAQB01006223.1/189436-189525 7260:Drosophila
willistoni
Length = 90
Score = 107 bits (54), Expect = 3e-23
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 10 cgaaggtgcattgtagtcgcattgtctgtgctccnnnnnnnnnnnncccccagtttctat 69
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 cgaaggtgcattgtagtcgcattgtctgtgctccaaaaaaaaaaaacccccagtttctat 60
Query: 70 tcaggcaatacaactgcagtgcaagcttcg 99
||||||||||||||||||||||||||||||
Sbjct: 61 tcaggcaatacaactgcagtgcaagcttcg 90
>RF00667;mir-33;AC154052.1/87680-87612 7227:Drosophila
melanogaster (fruit fly)
Length = 69
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 cgaaggtgcattgtagtcgcattgtctgt 38
|||||||||||||||||||||||||||||
Sbjct: 1 cgaaggtgcattgtagtcgcattgtctgt 29
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 69 ttcaggcaatacaactgcagtgcaagct 96
|||||||||||||||| |||||||||||
Sbjct: 39 ttcaggcaatacaacttcagtgcaagct 66
>RF00667;mir-33;AAFS01000103.1/61981-62050 46245:Drosophila
pseudoobscura pseudoobscura
Length = 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 aggtgcattgtagtcgcattgtctgt 38
||||||||||||||||||||||||||
Sbjct: 4 aggtgcattgtagtcgcattgtctgt 29
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 69 ttcaggcaatacaactgcagtgcaagct 96
||||||||||||||||||| ||||||||
Sbjct: 40 ttcaggcaatacaactgcaatgcaagct 67
>RF00667;mir-33;AAPU01011618.1/111826-111755 7230:Drosophila
mojavensis
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 aggtgcattgtagtcgcattgtctgt 38
||||||||||||||||||||||||||
Sbjct: 4 aggtgcattgtagtcgcattgtctgt 29
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 ggcaatacaactgcagtgcaagct 96
||||||||||||||||||||||||
Sbjct: 46 ggcaatacaactgcagtgcaagct 69
>RF00667;mir-33;AANI01017473.1/521223-521153 7244:Drosophila
virilis
Length = 71
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 aggtgcattgtagtcgcattgtctgt 38
||||||||||||||||||||||||||
Sbjct: 4 aggtgcattgtagtcgcattgtctgt 29
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 73 ggcaatacaactgcagtgcaagct 96
||||||||||||||||||||||||
Sbjct: 45 ggcaatacaactgcagtgcaagct 68
