miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00237;mir-9;AAPU01010522.1/88150-88211 7230:Drosophila
mojavensis
Length = 62
Score = 107 bits (54), Expect = 2e-23
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 8 tgctttggcgctttagctgtatgatagatttgactacttcataaagctagattaccaaag 67
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 1 tgctttggcgctttagctgtatgatagatttaaatacttcataaagctagattaccaaag 60
Query: 68 ca 69
||
Sbjct: 61 ca 62
>RF00237;mir-9;BABH01038615.1/30-88 7091:Bombyx mori (domestic
silkworm)
Length = 59
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 ttcataaagctagattaccaaagca 69
|||||||||||||||||||||||||
Sbjct: 35 ttcataaagctagattaccaaagca 59
>RF00237;mir-9;AAZO01004036.1/9144-9086 121224:Pediculus humanus
corporis (human body louse)
Length = 59
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 46 tcataaagctagattaccaaagca 69
||||||||||||||||||||||||
Sbjct: 24 tcataaagctagattaccaaagca 1
>RF00237;mir-9;AADG05005335.1/11528-11468 7460:Apis mellifera
(honey bee)
Length = 61
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tcataaagctagattaccaaagca 69
||||||||||||||||||||||||
Sbjct: 38 tcataaagctagattaccaaagca 61
>RF00237;mir-9;AAJJ01001943.1/9027-9086 7070:Tribolium castaneum
(red flour beetle)
Length = 60
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tcataaagctagattaccaaagca 69
||||||||||||||||||||||||
Sbjct: 37 tcataaagctagattaccaaagca 60
>RF00237;mir-9;AAGD02008921.1/11473-11541 31234:Caenorhabditis
remanei
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 acttcataaagctagattaccaaagc 68
||||||||||||||| ||||||||||
Sbjct: 43 acttcataaagctaggttaccaaagc 68
>RF00237;mir-9;AAQA01000025.1/15457-15396 6279:Brugia malayi
Length = 62
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 cttcataaagctagattaccaaagc 68
|||||||||||||| ||||||||||
Sbjct: 37 cttcataaagctaggttaccaaagc 61
>RF00237;mir-9;CAAC02000589.1/144634-144698 6238:Caenorhabditis
briggsae
Length = 65
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 cttcataaagctagattaccaaagc 68
|||||||||||||| ||||||||||
Sbjct: 40 cttcataaagctaggttaccaaagc 64
>RF00237;mir-9;ABEG01008189.1/7393-7325 135651:Caenorhabditis
brenneri
Length = 69
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 cttcataaagctagattaccaaagc 68
|||||||||||||| ||||||||||
Sbjct: 44 cttcataaagctaggttaccaaagc 68
