miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 246 bits (124), Expect = 6e-65
Identities = 127/128 (99%)
Strand = Plus / Plus
Query: 5 tgcaaggagcggtgacgagctagaggcagcaactgcatatcttgcaagaaaattggtttt 64
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaaggggcggtgacgagctagaggcagcaactgcatatcttgcaagaaaattggtttt 60
Query: 65 cgaaccataccgataattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgaaccataccgataattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctc 120
Query: 125 cctttgcc 132
||||||||
Sbjct: 121 cctttgcc 128
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 157 bits (79), Expect = 5e-38
Identities = 103/111 (92%)
Strand = Plus / Plus
Query: 22 agctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataat 81
|||||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct: 18 agctagagacagcaactgcatatcttgcaagaaaatcggttttatggccataccgatgat 77
Query: 82 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 132
||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 78 tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccctttgcc 128
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 80 attttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 125
||||||||||||| | |||||||| |||||| ||||||| ||||||
Sbjct: 53 attttcttgcaagatatgcagttgctgtctctagcttgccgcctcc 8
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 131 bits (66), Expect = 3e-30
Identities = 102/113 (90%), Gaps = 2/113 (1%)
Strand = Plus / Plus
Query: 22 agctagaggcagcaactgcatatcttgcaagaaaa--ttggttttcgaaccataccgata 79
|||||||||||||||||||||| |||||||||||| | |||||| | |||||||
Sbjct: 18 agctagaggcagcaactgcataccttgcaagaaaaaatcggttttgttgacgtaccgatg 77
Query: 80 attttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 132
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 attttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 130
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 81 ttttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 122
|||||||||||| | |||||||| || ||| |||||||||||
Sbjct: 52 ttttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 93.7 bits (47), Expect = 6e-19
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 82 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 132
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 117 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 167
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 79.8 bits (40), Expect = 9e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 82 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 125
||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 115 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 77.8 bits (39), Expect = 3e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 82 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 132
|||||||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct: 123 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccctttgcc 173
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 73.8 bits (37), Expect = 5e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 82 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 122
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 189 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 70 cataccgataattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 125
||||||||| || |||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 67 cataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 22 agctagaggcagcaactgcatatcttgcaagaa 54
|||| ||||||||||||||||| ||||||||||
Sbjct: 112 agcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 88 gcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 132
||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctccctttgcc 134
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 84 tcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 132
||||||||||| |||||||| || ||||||||| |||||||||||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctccctttgcc 129
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 22 agctagaggcagcaactgcatatcttgcaaga 53
|||| ||||||||||||||||| |||||||||
Sbjct: 112 agcttgaggcagcaactgcataacttgcaaga 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 96 tgcagttgttgtctcaagcttgctgcc 122
||||||||||||||| |||||||||||
Sbjct: 37 tgcagttgttgtctcgagcttgctgcc 11
