miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 256 bits (129), Expect = 6e-68
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 1 tgcaagtggcggcagcaagctagaggcagcaactgcataccttgcaagaaaaaatcggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaagtggcggcagcaagctagaggcagcaactgcataccttgcaagaaaaaatcggtt 60
Query: 61 ttgttgacgtaccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgttgacgtaccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 120
Query: 121 tccctttgc 129
|||||||||
Sbjct: 121 tccctttgc 129
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 79 ttttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 120
|||||||||||| | |||||||| || ||| |||||||||||
Sbjct: 52 ttttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 11 ggcagcaagctagaggcagcaactgcataccttgcaagaaaa 52
||||||||||| ||| || |||||||| | ||||||||||||
Sbjct: 120 ggcagcaagcttgagacaacaactgcacaacttgcaagaaaa 79
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 163 bits (82), Expect = 7e-40
Identities = 118/129 (91%), Gaps = 2/129 (1%)
Strand = Plus / Plus
Query: 1 tgcaagtggcggcagcaagctagaggcagcaactgcataccttgcaagaaaaaatcggtt 60
||||||||| ||| ||||||||||| ||||||||||||| |||||||||||| ||||||
Sbjct: 1 tgcaagtggaggcggcaagctagagacagcaactgcatatcttgcaagaaaa--tcggtt 58
Query: 61 ttgttgacgtaccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 120
|| | | | ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 59 ttatggccataccgatgattttcttgcaagctgtgcagttgttgtctcaagcttgctgcc 118
Query: 121 tccctttgc 129
|||||||||
Sbjct: 119 tccctttgc 127
Score = 54.0 bits (27), Expect = 5e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 77 gattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 123
|||||||||||||| | |||||||| |||||| ||||||| ||||||
Sbjct: 54 gattttcttgcaagatatgcagttgctgtctctagcttgccgcctcc 8
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 11 ggcagcaagctagaggcagcaactgcataccttgcaagaaaa 52
||||||||||| ||| || |||||||| | ||||||||||||
Sbjct: 118 ggcagcaagcttgagacaacaactgcacagcttgcaagaaaa 77
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 129 bits (65), Expect = 1e-29
Identities = 101/112 (90%), Gaps = 2/112 (1%)
Strand = Plus / Plus
Query: 18 agctagaggcagcaactgcataccttgcaagaaaaaatcggttttgttgacgtaccgatg 77
|||||||||||||||||||||| |||||||||||| | |||||| | |||||||
Sbjct: 18 agctagaggcagcaactgcatatcttgcaagaaaa--ttggttttcgaaccataccgata 75
Query: 78 attttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 129
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 attttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 127
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 11 ggcagcaagctagaggcagcaactgcataccttgcaagaaaa 52
||||||||||| ||| || |||||||| | ||||||||||||
Sbjct: 118 ggcagcaagcttgagacaacaactgcacaacttgcaagaaaa 77
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 91.7 bits (46), Expect = 2e-18
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 80 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 129
||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 117 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgc 166
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 11 ggcagcaagctagaggcagcaactgcataccttgcaagaaa 51
||||||||||| |||||| |||||||| | |||||||||||
Sbjct: 157 ggcagcaagcttgaggcaacaactgcacaacttgcaagaaa 117
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 81.8 bits (41), Expect = 2e-15
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 75 atgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 123
|||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 110 atgactttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 11 ggcagcaagctagaggcagcaactgcataccttgcaagaaa 51
||||||||||| |||||| |||||||| | |||||||||||
Sbjct: 155 ggcagcaagcttgaggcaacaactgcacaacttgcaagaaa 115
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 75.8 bits (38), Expect = 1e-13
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 80 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 129
|||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct: 123 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccctttgc 172
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 11 ggcagcaagctagaggcagcaactgcataccttgcaagaaa 51
||||||||||| ||||||||||||||| |||||||||||
Sbjct: 163 ggcagcaagcttgaggcagcaactgcacgacttgcaagaaa 123
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 75.8 bits (38), Expect = 1e-13
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 70 taccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 123
|||||||||| |||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 69 taccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
Score = 63.9 bits (32), Expect = 5e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 11 ggcagcaagctagaggcagcaactgcataccttgcaagaa 50
||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 119 ggcagcaagcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 73.8 bits (37), Expect = 5e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 80 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 120
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 189 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 11 ggcagcaagctagaggcagcaactgcataccttgcaagaaa 51
||||||||||| |||||| |||||||| | |||||||||||
Sbjct: 229 ggcagcaagcttgaggcaacaactgcacaacttgcaagaaa 189
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 63.9 bits (32), Expect = 5e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 86 gcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 129
||||||| |||||||| || ||||||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctccctttgc 133
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 11 ggcagcaagctagaggcagcaactgcataccttgc 45
||||||||||| ||||||||||||||||| |||||
Sbjct: 124 ggcagcaagcttgaggcagcaactgcataacttgc 90
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 63.9 bits (32), Expect = 5e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 82 tcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 129
||||||||||| |||||||| || ||||||||| ||||||||||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctccctttgc 128
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 11 ggcagcaagctagaggcagcaactgcataccttgcaaga 49
||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 119 ggcaggaagcttgaggcagcaactgcataacttgcaaga 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 94 tgcagttgttgtctcaagcttgctgcc 120
||||||||||||||| |||||||||||
Sbjct: 37 tgcagttgttgtctcgagcttgctgcc 11
