miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00237;mir-9;AAPU01010522.1/88150-88211 7230:Drosophila
mojavensis
Length = 62
Score = 101 bits (51), Expect = 2e-21
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 15 tgctttggcgctttagctgtatgatagatttatactacttcataaagctagattaccaaa 74
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 1 tgctttggcgctttagctgtatgatagattta-aatacttcataaagctagattaccaaa 59
Query: 75 gca 77
|||
Sbjct: 60 gca 62
>RF00237;mir-9;BABH01038615.1/30-88 7091:Bombyx mori (domestic
silkworm)
Length = 59
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 ttcataaagctagattaccaaagca 77
|||||||||||||||||||||||||
Sbjct: 35 ttcataaagctagattaccaaagca 59
>RF00237;mir-9;AAZO01004036.1/9144-9086 121224:Pediculus humanus
corporis (human body louse)
Length = 59
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 54 tcataaagctagattaccaaagca 77
||||||||||||||||||||||||
Sbjct: 24 tcataaagctagattaccaaagca 1
>RF00237;mir-9;AADG05005335.1/11528-11468 7460:Apis mellifera
(honey bee)
Length = 61
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tcataaagctagattaccaaagca 77
||||||||||||||||||||||||
Sbjct: 38 tcataaagctagattaccaaagca 61
>RF00237;mir-9;AAJJ01001943.1/9027-9086 7070:Tribolium castaneum
(red flour beetle)
Length = 60
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tcataaagctagattaccaaagca 77
||||||||||||||||||||||||
Sbjct: 37 tcataaagctagattaccaaagca 60
>RF00237;mir-9;AAGD02008921.1/11473-11541 31234:Caenorhabditis
remanei
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 acttcataaagctagattaccaaagc 76
||||||||||||||| ||||||||||
Sbjct: 43 acttcataaagctaggttaccaaagc 68
