miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 398 bits (201), Expect = e-110
Identities = 228/235 (97%), Gaps = 4/235 (1%)
Strand = Plus / Plus
Query: 12 gggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttccgc 71
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 1 gggtttgaagcggagctcctatcattccaatgaagggtcgtaccgaagggccggttccgc 60
Query: 72 tgctcgttcatggttcccactatcctatctcatcatgtgtgtatat--atgtattccatg 129
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 61 tgctcgttcatggttcccactatcctatctcatcatgtgtatatatgtatgtattccatg 120
Query: 130 ggggagggtttctctctcgtctttgagataggcttgtggtttgcatgaccgaggagctgc 189
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggggagggtttctc--tcgtctttgagataggcttgtggtttgcatgaccgaggagctgc 178
Query: 190 accgcccccttgctggccgctctttggattgaagggagctctgcatcctgatcca 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 accgcccccttgctggccgctctttggattgaagggagctctgcatcctgatcca 233
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 184 bits (93), Expect = 4e-46
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 148 gtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggcc 207
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 148 gtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggcc 207
Query: 208 gctctttggattgaagggagctctgcatcctgatcca 244
|||||||||||||||||||||||||||||||||||||
Sbjct: 208 gctctttggattgaagggagctctgcatcctgatcca 244
Score = 113 bits (57), Expect = 1e-24
Identities = 94/105 (89%), Gaps = 1/105 (0%)
Strand = Plus / Plus
Query: 18 gaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctcg 77
|||||| |||||||||||||||||||||||| | || | ||| |||||||||||||||
Sbjct: 7 gaagcgaagctcctatcattccaatgaagggcccttttcatggg-tggttccgctgctcg 65
Query: 78 ttcatggttcccactatcctatctcatcatgtgtgtatatatgta 122
|||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct: 66 ttcatggttcccactatcctatctcatcatgtatgtgtgtatgta 110
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 99.6 bits (50), Expect = 2e-20
Identities = 80/90 (88%)
Strand = Plus / Plus
Query: 154 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 213
|||||||||||||||||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 97 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 156
Query: 214 tggattgaagggagctctgcatcctgatcc 243
||||||||||||||||||||||| ||||||
Sbjct: 157 tggattgaagggagctctgcatcttgatcc 186
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 70 gctgctcgttcatggttcccactatcctatctcat 104
|||||| |||||||||||||||||| |||||||||
Sbjct: 55 gctgcttgttcatggttcccactattctatctcat 89
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 91.7 bits (46), Expect = 5e-18
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 152 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgccccctt-gctggccgct 210
||||||| |||||||||||||||||||||||||||||| || |||||| | || |||||
Sbjct: 129 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 188
Query: 211 ctttggattgaagggagctctgcatc 236
|||||| ||||||||||||||||||
Sbjct: 189 gtttggagtgaagggagctctgcatc 214
Score = 58.0 bits (29), Expect = 6e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 70 gctgctcgttcatggttcccactatcctatctcatca 106
||||||||||||||||||||||| ||| |||||||||
Sbjct: 58 gctgctcgttcatggttcccactgtcccatctcatca 94
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 85.7 bits (43), Expect = 3e-16
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 152 ttgagataggcttgtggtttgcatgaccgaggagctgcaccg-cccccttgctggccgct 210
||||||| ||| ||||||||||||||||||||||||||| || |||| ||| | |||||
Sbjct: 135 ttgagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgct 194
Query: 211 ctttggattgaagggagctctgc 233
| |||||||||||||||||||||
Sbjct: 195 cgttggattgaagggagctctgc 217
Score = 65.9 bits (33), Expect = 3e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 70 gctgctcgttcatggttcccactatcctatctcatca 106
||||||||||||||||||||||||||| |||||||||
Sbjct: 58 gctgctcgttcatggttcccactatcccatctcatca 94
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 209 ctctttggattgaagggagctctgcatc 236
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 210 tctttggattgaagggagctctgcatc 236
|||||||||||||||||||||| ||||
Sbjct: 174 tctttggattgaagggagctcttcatc 200
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 210 tctttggattgaagggagctctgcatc 236
|||||||||||||||||||||| ||||
Sbjct: 170 tctttggattgaagggagctctacatc 196
