miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00464;mir-92;AABU01002774.1/17891638-17891716 7227:Drosophila
melanogaster (fruit fly)
Length = 79
Score = 149 bits (75), Expect = 7e-36
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 7 aatttcccgtaggacgggaaggtgtcaacgttttgcattttgaataaacattgcacttgt 66
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 aatttcccgtaggacgggaaggtgtcaacgttttgcatttcgaataaacattgcacttgt 60
Query: 67 cccggcctatgggcggttt 85
|||||||||||||||||||
Sbjct: 61 cccggcctatgggcggttt 79
>RF00464;mir-92;AAPU01011126.1/203266-203187 7230:Drosophila
mojavensis
Length = 80
Score = 91.7 bits (46), Expect = 1e-18
Identities = 65/70 (92%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 17 aggacgggaaggtgtcaacgttttgcattttgaat-aaacattgcacttgtcccggccta 75
|||||||||||||||||||||||| | |||||| | ||||||||||||||||||||||||
Sbjct: 11 aggacgggaaggtgtcaacgttttaccttttgattcaaacattgcacttgtcccggccta 70
Query: 76 tgggcggttt 85
|| |||||||
Sbjct: 71 tgagcggttt 80
>RF00464;mir-92;AASS01038642.1/1728-1802 7240:Drosophila simulans
Length = 75
Score = 85.7 bits (43), Expect = 9e-17
Identities = 72/78 (92%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 7 aatttcccgtaggacgggaaggtgtcaacgttttgcattttgaataaacattgcacttgt 66
||||||||||||||||||| ||||||| |||||||||||| || ||||||||||||||
Sbjct: 1 aatttcccgtaggacggga-ggtgtca-cgttttgcatttcgat--aacattgcacttgt 56
Query: 67 cccggcctatgggcggtt 84
||||||||||||||||||
Sbjct: 57 cccggcctatgggcggtt 74
>RF00464;mir-92;ABRQ01318667.1/1002-921 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 attgcacttgtcccggcctatgg 78
|||||||||||||||||||||||
Sbjct: 53 attgcacttgtcccggcctatgg 75
>RF00464;mir-92;AAWU01030066.1/31253-31174 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 attgcacttgtcccggcctatg 77
||||||||||||||||||||||
Sbjct: 51 attgcacttgtcccggcctatg 72
>RF00464;mir-92;AAGE02006821.1/67754-67834 7159:Aedes aegypti
(yellow fever mosquito)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 attgcacttgtcccggcctatg 77
||||||||||||||||||||||
Sbjct: 52 attgcacttgtcccggcctatg 73
>RF00464;mir-92;AAAB01007923.1/22644-22568 180454:Anopheles
gambiae str. PEST
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 attgcacttgtcccggcctatg 77
||||||||||||||||||||||
Sbjct: 48 attgcacttgtcccggcctatg 69
