miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00822;mir-274;AAKO01000079.1/37948-38047 7238:Drosophila
sechellia
Length = 100
Score = 176 bits (89), Expect = 3e-44
Identities = 95/97 (97%)
Strand = Plus / Plus
Query: 1 tgtgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggtcgccaggatta 60
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 4 tgtgttgcagtttcgttttgtgaccgacactaacgggtaattgtttgatcaccaggatta 63
Query: 61 ctcgtttttgcgatcacaaatcatgaaattgcagcaa 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 64 ctcgtttttgcgatcacaaatcatgaaattgcagcaa 100
>RF00822;mir-274;AAPP01019289.1/330187-330287 7217:Drosophila
ananassae
Length = 101
Score = 103 bits (52), Expect = 4e-22
Identities = 86/96 (89%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 3 tgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggtcgc-caggattac 61
||||||||||||||||||||||||||||||||||||| || || | |||||||||
Sbjct: 6 tgttgcagtttcgttttgtgaccgacactaacgggtattttacaggacatacaggattac 65
Query: 62 tcgtttttgcgatcacaaatcatgaaattgcagcaa 97
||||||||||||||||||||| ||||||||||||||
Sbjct: 66 tcgtttttgcgatcacaaatcctgaaattgcagcaa 101
>RF00822;mir-274;AADE01002814.1/8876-8780 46245:Drosophila
pseudoobscura pseudoobscura
Length = 97
Score = 79.8 bits (40), Expect = 6e-15
Identities = 82/92 (89%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 6 tgcagtttcgttttgtgaccgacactaacgggtaattgtttggtcgccaggattactcgt 65
||||||||| ||||||||||||||||||||||||| || ||| || ||||| |||||||
Sbjct: 9 tgcagtttcattttgtgaccgacactaacgggtaa-tggctggccg-caggactactcgt 66
Query: 66 ttttgcgatcacaaatcatgaaattgcagcaa 97
|||||||||||| ||| ||||||||||||||
Sbjct: 67 ttttgcgatcac-aatactgaaattgcagcaa 97
>RF00822;mir-274;AAPU01011627.1/22605-22713 7230:Drosophila
mojavensis
Length = 109
Score = 69.9 bits (35), Expect = 6e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1 tgtgttgcagtttcgttttgtgaccgacactaacgggta 39
||||||||||||||| |||||||||||||||||||||||
Sbjct: 4 tgtgttgcagtttcggtttgtgaccgacactaacgggta 42
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 59 tactcgtttttgcgatcacaaatcatgaaattgca 93
||||||||||||||||||||||| ||||||||||
Sbjct: 71 tactcgtttttgcgatcacaaattctgaaattgca 105
>RF00822;mir-274;AAPT01020611.1/127253-127143 7222:Drosophila
grimshawi
Length = 111
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 2 gtgttgcagtttcgttttgtgaccgacactaacgggta 39
|||||||||||||| |||||||||||||||||||||||
Sbjct: 5 gtgttgcagtttcggtttgtgaccgacactaacgggta 42
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 58 ttactcgtttttgcgatcacaaatcatgaaattgca 93
|||||||||||||||||||||||| ||||||||||
Sbjct: 72 ttactcgtttttgcgatcacaaattctgaaattgca 107
>RF00822;mir-274;AAQB01007682.1/34817-34703 7260:Drosophila
willistoni
Length = 115
Score = 65.9 bits (33), Expect = 9e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 3 tgttgcagtttcgttttgtgaccgacactaacgggta 39
|||||||||||| ||||||||||||||||||||||||
Sbjct: 6 tgttgcagtttcattttgtgaccgacactaacgggta 42
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 58 ttactcgtttttgcgatcacaaatcatgaaattgcagcaa 97
|||||||||||||||||||||||| ||||||||||||||
Sbjct: 76 ttactcgtttttgcgatcacaaattctgaaattgcagcaa 115
>RF00822;mir-274;AANI01017486.1/215294-215400 7244:Drosophila
virilis
Length = 107
Score = 65.9 bits (33), Expect = 9e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 3 tgttgcagtttcgttttgtgaccgacactaacgggta 39
||||||||||||| |||||||||||||||||||||||
Sbjct: 6 tgttgcagtttcggtttgtgaccgacactaacgggta 42
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 58 ttactcgtttttgcgatcacaaatcatgaaattgca 93
|||||||||||||||||||||||| ||||||||||
Sbjct: 68 ttactcgtttttgcgatcacaaattctgaaattgca 103
